Variant report

Variant	rs10473288
Chromosome Location	chr5:42683753-42683754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:42683652..42685586-chr9:133557490..133559325,2	MCF-7	breast:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10038285	0.85[EUR][1000 genomes]
rs10041108	0.90[EUR][1000 genomes]
rs10041130	0.88[EUR][1000 genomes]
rs10041932	0.83[ASN][1000 genomes]
rs10044117	0.83[ASN][1000 genomes]
rs10050889	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10063672	0.85[EUR][1000 genomes]
rs10941583	0.91[EUR][1000 genomes]
rs10941588	0.84[EUR][1000 genomes]
rs1109882	0.85[EUR][1000 genomes]
rs11948463	0.83[ASN][1000 genomes]
rs12513710	0.85[EUR][1000 genomes]
rs12514437	0.85[EUR][1000 genomes]
rs12518067	0.88[EUR][1000 genomes]
rs12521311	0.87[EUR][1000 genomes]
rs1423655	0.84[EUR][1000 genomes]
rs230808	0.82[EUR][1000 genomes]
rs230811	0.82[EUR][1000 genomes]
rs28551699	0.83[EUR][1000 genomes]
rs28919913	0.81[EUR][1000 genomes]
rs2910854	0.84[EUR][1000 genomes]
rs2910860	0.84[EUR][1000 genomes]
rs2910863	0.84[EUR][1000 genomes]
rs2910866	0.84[EUR][1000 genomes]
rs2973008	0.84[EUR][1000 genomes]
rs34159518	0.84[EUR][1000 genomes]
rs34343411	0.83[ASN][1000 genomes]
rs36109172	0.87[EUR][1000 genomes]
rs3877899	0.82[EUR][1000 genomes]
rs3884519	0.85[EUR][1000 genomes]
rs4073475	0.83[EUR][1000 genomes]
rs4073476	0.83[EUR][1000 genomes]
rs4242116	0.88[EUR][1000 genomes]
rs4242117	0.87[EUR][1000 genomes]
rs4242118	0.86[EUR][1000 genomes]
rs4242122	0.85[EUR][1000 genomes]
rs4242123	0.85[EUR][1000 genomes]
rs4242124	0.85[EUR][1000 genomes]
rs4315928	0.90[EUR][1000 genomes]
rs4355531	0.83[ASN][1000 genomes]
rs4357041	0.83[EUR][1000 genomes]
rs4376276	0.90[EUR][1000 genomes]
rs4394131	0.85[EUR][1000 genomes]
rs4413537	0.83[ASN][1000 genomes]
rs4419597	0.83[ASN][1000 genomes]
rs4451056	0.83[ASN][1000 genomes]
rs4518410	0.85[EUR][1000 genomes]
rs4523006	0.83[EUR][1000 genomes]
rs4523007	0.83[ASN][1000 genomes]
rs4547964	0.92[EUR][1000 genomes]
rs4569879	0.84[EUR][1000 genomes]
rs4590183	0.83[EUR][1000 genomes]
rs4594864	0.83[ASN][1000 genomes]
rs4610468	0.85[EUR][1000 genomes]
rs4612114	0.84[EUR][1000 genomes]
rs4637559	0.90[EUR][1000 genomes]
rs4866792	0.83[ASN][1000 genomes]
rs4866793	0.86[EUR][1000 genomes]
rs4866943	0.83[ASN][1000 genomes]
rs4866955	0.85[EUR][1000 genomes]
rs4866956	0.83[EUR][1000 genomes]
rs4866957	0.83[EUR][1000 genomes]
rs4994772	0.83[ASN][1000 genomes]
rs56350930	0.86[EUR][1000 genomes]
rs6413428	0.81[EUR][1000 genomes]
rs6414898	0.91[EUR][1000 genomes]
rs6451627	0.83[EUR][1000 genomes]
rs6451632	0.83[ASN][1000 genomes]
rs6451633	0.83[ASN][1000 genomes]
rs6451635	0.83[ASN][1000 genomes]
rs6451641	0.86[EUR][1000 genomes]
rs6451643	0.85[EUR][1000 genomes]
rs6864999	0.87[EUR][1000 genomes]
rs6871947	0.85[EUR][1000 genomes]
rs6873340	0.89[EUR][1000 genomes]
rs6873545	0.84[EUR][1000 genomes]
rs6873794	0.83[ASN][1000 genomes]
rs6878461	0.83[ASN][1000 genomes]
rs6878512	0.83[ASN][1000 genomes]
rs6886047	0.87[EUR][1000 genomes]
rs6897530	0.87[EUR][1000 genomes]
rs7442690	0.83[ASN][1000 genomes]
rs7442754	0.86[EUR][1000 genomes]
rs7444761	0.90[EUR][1000 genomes]
rs7447061	0.92[EUR][1000 genomes]
rs7447731	0.83[ASN][1000 genomes]
rs7701605	0.85[EUR][1000 genomes]
rs7715032	0.83[EUR][1000 genomes]
rs7721081	0.83[ASN][1000 genomes]
rs7722558	0.83[ASN][1000 genomes]
rs9292855	0.83[ASN][1000 genomes]
rs9292856	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1031160	chr5:42610090-42843255	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019696	chr5:42610090-42844191	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv597886	chr5:42610409-42854408	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1029933	chr5:42611976-42833385	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv537735	chr5:42611976-42833385	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1019648	chr5:42616487-42696943	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv537736	chr5:42616487-42696943	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42677000-42691600	Weak transcription	Aorta	Aorta
2	chr5:42679800-42691600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:42680800-42688000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:42683000-42684200	Weak transcription	Liver	Liver
5	chr5:42683000-42688600	Weak transcription	Adipose Nuclei	Adipose
6	chr5:42683000-42688800	Weak transcription	Fetal Lung	lung
7	chr5:42683000-42689000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:42683200-42691200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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