Variant report

Variant	rs10474293
Chromosome Location	chr5:88487434-88487435
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10037415	0.95[ASN][1000 genomes]
rs36058515	0.83[EUR][1000 genomes]
rs72773891	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532159	chr5:88016214-88783092	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv533373	chr5:88062497-89028098	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv532160	chr5:88150666-88564477	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv529543	chr5:88348147-88783092	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:88484600-88487600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr5:88486400-88487800	Enhancers	HSMMtube	muscle
3	chr5:88486600-88487600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:88486600-88487600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr5:88486600-88487600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:88486600-88487600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr5:88486600-88487800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr5:88486600-88488400	Enhancers	HSMM	muscle
9	chr5:88486800-88487600	Enhancers	Psoas Muscle	Psoas
10	chr5:88486800-88488200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr5:88487000-88489800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:88487400-88487600	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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