Variant report

Variant	rs10474784
Chromosome Location	chr5:5085812-5085813
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10077722	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10475281	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12654635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1382896	0.88[AMR][1000 genomes]
rs1812836	0.90[AMR][1000 genomes]
rs182116	0.81[AMR][1000 genomes]
rs1842240	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs270628	0.81[AMR][1000 genomes]
rs270631	0.81[AMR][1000 genomes]
rs270636	0.80[AMR][1000 genomes]
rs270637	0.80[AMR][1000 genomes]
rs272204	0.92[CEU][hapmap];0.87[AMR][1000 genomes]
rs4701671	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs697720	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs814788	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021653	chr5:4932992-5201887	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2757980	chr5:4980876-5184615	Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2759318	chr5:4980876-5184615	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv830194	chr5:5002459-5187667	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5081000-5087000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:5081400-5087000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:5084600-5087000	Weak transcription	Ovary	ovary
4	chr5:5085000-5086000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:5085200-5087000	Enhancers	HSMMtube	muscle
6	chr5:5085200-5087200	Enhancers	Fetal Muscle Leg	muscle
7	chr5:5085400-5086000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:5085400-5087600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:5085400-5087800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:5085600-5086400	Enhancers	Fetal Stomach	stomach
11	chr5:5085600-5087600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:5085800-5086000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr5:5085800-5086800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:5085800-5087000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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