Variant report

Variant	rs10475126
Chromosome Location	chr5:2017510-2017511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:2015069..2018561-chr5:2019623..2022570,4	K562	blood:
2	chr5:1772591..1773619-chr5:2017406..2018159,3	MCF-7	breast:
3	chr5:1801141..1804097-chr5:2015128..2017981,3	MCF-7	breast:
4	chr5:2013280..2015033-chr5:2015191..2017908,2	MCF-7	breast:
5	chr5:1763854..1764458-chr5:2017408..2018220,3	K562	blood:

Variant related genes	Relation type
ENSG00000145494	Chromatin interaction
ENSG00000171421	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10462750	0.97[ASN][1000 genomes]
rs10475128	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11133920	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1123390	0.81[EUR][1000 genomes]
rs1123391	0.81[EUR][1000 genomes]
rs1486937	0.87[EUR][1000 genomes]
rs1552435	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1601641	0.87[EUR][1000 genomes]
rs16902318	0.97[ASN][1000 genomes]
rs16902321	0.97[ASN][1000 genomes]
rs2129471	0.97[ASN][1000 genomes]
rs2129472	0.98[ASN][1000 genomes]
rs28392808	0.97[ASN][1000 genomes]
rs4074914	0.97[ASN][1000 genomes]
rs4246753	0.97[ASN][1000 genomes]
rs4246754	0.97[ASN][1000 genomes]
rs4254943	0.95[ASN][1000 genomes]
rs4263538	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4398675	0.97[ASN][1000 genomes]
rs4413568	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4463207	1.00[ASN][1000 genomes]
rs4505990	0.95[ASN][1000 genomes]
rs4975794	0.97[ASN][1000 genomes]
rs4975795	0.97[ASN][1000 genomes]
rs4975796	0.97[ASN][1000 genomes]
rs4975797	0.97[ASN][1000 genomes]
rs4975798	0.97[ASN][1000 genomes]
rs4975802	0.97[ASN][1000 genomes]
rs61177713	1.00[ASN][1000 genomes]
rs6867032	0.97[ASN][1000 genomes]
rs6870127	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7729761	0.97[ASN][1000 genomes]
rs965276	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv869236	chr5:1719263-2259100	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv915846	chr5:1891098-2167677	Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1026930	chr5:1898993-2126061	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv427705	chr5:1950467-2115059	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:2013800-2018800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:2014000-2020200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:2014800-2025000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:2016400-2021600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links