Variant report

Variant	rs10481102
Chromosome Location	chr8:104180922-104180923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:104163633..104166495-chr8:104178949..104181620,2	MCF-7	breast:
2	chr8:104180259..104182637-chr8:104187109..104189899,2	K562	blood:
3	chr8:104179833..104182504-chr8:104186814..104188906,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164929	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10110129	1.00[ASN][1000 genomes]
rs10111507	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112046	1.00[ASN][1000 genomes]
rs10113161	1.00[ASN][1000 genomes]
rs10113728	1.00[ASN][1000 genomes]
rs11774996	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11784151	1.00[ASN][1000 genomes]
rs13255229	1.00[ASN][1000 genomes]
rs13262291	1.00[ASN][1000 genomes]
rs13275173	1.00[ASN][1000 genomes]
rs13282967	1.00[AFR][1000 genomes]
rs13439041	1.00[ASN][1000 genomes]
rs1389690	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494282	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17204757	1.00[ASN][1000 genomes]
rs17793532	1.00[ASN][1000 genomes]
rs28495148	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28709120	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28735228	1.00[ASN][1000 genomes]
rs728909	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10481102	UBR5	cis	thalamus	BrainEAC

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104177600-104186600	Weak transcription	Aorta	Aorta
2	chr8:104178200-104181000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:104178200-104181400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:104178400-104182200	Weak transcription	Brain Hippocampus Middle	brain
5	chr8:104178400-104182600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr8:104178400-104183800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:104178600-104183800	Weak transcription	Brain Angular Gyrus	brain
8	chr8:104178600-104184800	Weak transcription	Brain Substantia Nigra	brain
9	chr8:104178800-104181800	Weak transcription	Brain Anterior Caudate	brain
10	chr8:104178800-104183800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:104179200-104185400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:104179400-104183200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:104179600-104181000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
14	chr8:104179600-104181400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:104179800-104182000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr8:104179800-104182000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:104180000-104181000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr8:104180400-104181800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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