Variant report

Variant	rs10481155
Chromosome Location	chr8:126621119-126621120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:126619050..126624593-chr8:126625487..126628558,5	MCF-7	breast:
2	chr8:126538658..126542290-chr8:126619301..126623874,4	MCF-7	breast:
3	chr8:126619990..126624184-chr8:126625667..126627988,3	K562	blood:
4	chr8:126620542..126623199-chr8:126642002..126644865,2	MCF-7	breast:
5	chr8:126440493..126443546-chr8:126619136..126621906,3	MCF-7	breast:
6	chr8:126605898..126607935-chr8:126618594..126621504,4	MCF-7	breast:
7	chr8:126615487..126618123-chr8:126620210..126621932,2	K562	blood:
8	chr8:126619524..126621490-chr8:126626488..126629333,2	K562	blood:
9	chr8:126618476..126621676-chr8:126622245..126624732,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11777118	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs11783267	0.84[EUR][1000 genomes]
rs11995177	0.81[EUR][1000 genomes]
rs2891718	0.90[CEU][hapmap];0.97[EUR][1000 genomes]
rs7004111	1.00[CEU][hapmap];0.84[GIH][hapmap];0.89[TSI][hapmap];0.98[EUR][1000 genomes]
rs7004305	0.98[EUR][1000 genomes]
rs7004432	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6377	chr8:126579620-126639253	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv38	chr8:126593465-126639253	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126611800-126622600	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:126612200-126625400	Enhancers	Primary B cells from cord blood	blood
3	chr8:126613200-126621800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:126616400-126621600	Enhancers	Placenta	Placenta
5	chr8:126616400-126622800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr8:126616800-126621600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr8:126616800-126621600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr8:126617400-126621600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:126617400-126621600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr8:126618000-126621400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr8:126618400-126621400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr8:126618400-126621400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr8:126618600-126621400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr8:126618800-126627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:126619000-126621600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:126619400-126621400	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr8:126619400-126621600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:126619600-126621200	Enhancers	Primary hematopoietic stem cells	blood
19	chr8:126619600-126621200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr8:126619600-126621400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:126619600-126621400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:126619600-126622000	Enhancers	Brain Anterior Caudate	brain
23	chr8:126619600-126622000	Enhancers	Brain Hippocampus Middle	brain
24	chr8:126619800-126621200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr8:126619800-126621400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:126619800-126621400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr8:126619800-126621400	Enhancers	Esophagus	oesophagus
28	chr8:126619800-126621400	Enhancers	Fetal Lung	lung
29	chr8:126619800-126621800	Enhancers	Lung	lung
30	chr8:126619800-126622200	Enhancers	Spleen	Spleen
31	chr8:126620200-126621400	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr8:126620200-126621400	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr8:126620200-126627800	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr8:126620400-126621400	Enhancers	Ovary	ovary
35	chr8:126620400-126621600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr8:126620400-126621800	Enhancers	Gastric	stomach
37	chr8:126620600-126621400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr8:126620600-126621400	Enhancers	Colonic Mucosa	Colon
39	chr8:126620600-126621800	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr8:126620600-126625400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr8:126620800-126625400	Weak transcription	Adipose Nuclei	Adipose
42	chr8:126620800-126625400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr8:126620800-126625600	Weak transcription	Fetal Brain Male	brain
44	chr8:126620800-126626000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr8:126621000-126622400	Weak transcription	Fetal Stomach	stomach
46	chr8:126621000-126622400	Enhancers	GM12878-XiMat	blood
47	chr8:126621000-126624000	Weak transcription	Fetal Muscle Leg	muscle
48	chr8:126621000-126624400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr8:126621000-126625400	Weak transcription	Brain Substantia Nigra	brain
50	chr8:126621000-126625600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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