Variant report

Variant	rs1048246
Chromosome Location	chr10:22825492-22825493
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22817636..22822369-chr10:22822584..22826795,5	K562	blood:
2	chr10:22630133..22633021-chr10:22824543..22827360,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10734041	0.94[AFR][1000 genomes]
rs11013011	1.00[AMR][1000 genomes]
rs12247343	1.00[AMR][1000 genomes]
rs12260582	1.00[AMR][1000 genomes]
rs55840143	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975032	chr10:22823880-22826501	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22819000-22830000	Weak transcription	HUVEC	blood vessel
2	chr10:22819400-22827800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:22820000-22826600	Weak transcription	Aorta	Aorta
4	chr10:22820200-22826200	Weak transcription	A549	lung
5	chr10:22820200-22827800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:22820200-22828000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:22820600-22830000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:22820800-22828000	Weak transcription	HSMMtube	muscle
9	chr10:22821400-22826000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:22821400-22826000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:22821400-22826200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:22821600-22827400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:22822000-22826200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:22822200-22826800	Enhancers	Brain Substantia Nigra	brain
15	chr10:22822200-22834200	Strong transcription	Primary T cells from cord blood	blood
16	chr10:22822200-22856000	Weak transcription	Small Intestine	intestine
17	chr10:22822400-22825800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr10:22822400-22826000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:22822400-22826600	Weak transcription	Gastric	stomach
20	chr10:22822400-22826800	Enhancers	Brain Cingulate Gyrus	brain
21	chr10:22822400-22833400	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr10:22822600-22825600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:22822600-22826600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:22822600-22826600	Weak transcription	Right Ventricle	heart
25	chr10:22822800-22827000	Weak transcription	Fetal Intestine Large	intestine
26	chr10:22822800-22832600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:22822800-22833400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr10:22823000-22844600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:22823200-22825800	Weak transcription	Liver	Liver
31	chr10:22823200-22826000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:22823200-22831200	Strong transcription	Fetal Thymus	thymus
33	chr10:22823400-22826600	Weak transcription	Right Atrium	heart
34	chr10:22823400-22828800	Strong transcription	GM12878-XiMat	blood
35	chr10:22823400-22845200	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr10:22823600-22825600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:22823600-22825800	Weak transcription	Placenta	Placenta
38	chr10:22823600-22826000	Weak transcription	NHLF	lung
39	chr10:22823600-22826600	Weak transcription	Left Ventricle	heart
40	chr10:22823600-22826800	Weak transcription	Esophagus	oesophagus
41	chr10:22823600-22828200	Weak transcription	NHDF-Ad	bronchial
42	chr10:22823600-22842200	Weak transcription	Colon Smooth Muscle	Colon
43	chr10:22823800-22825800	Weak transcription	Ovary	ovary
44	chr10:22823800-22826200	Weak transcription	Brain Anterior Caudate	brain
45	chr10:22823800-22826800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:22823800-22833800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:22823800-22845200	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr10:22824000-22825800	Weak transcription	K562	blood
49	chr10:22824000-22826000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr10:22824000-22830000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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