Variant report

Variant	rs10483168
Chromosome Location	chr22:33440219-33440220
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000100150	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000100225	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11089599	1.00[JPT][hapmap]
rs11703516	1.00[JPT][hapmap]
rs11703670	1.00[JPT][hapmap]
rs11703699	1.00[JPT][hapmap]
rs11704349	0.82[EUR][1000 genomes]
rs11704652	1.00[JPT][hapmap]
rs12158631	1.00[JPT][hapmap]
rs137559	1.00[JPT][hapmap]
rs137561	1.00[JPT][hapmap]
rs17779789	1.00[JPT][hapmap]
rs2042793	1.00[JPT][hapmap]
rs2042794	1.00[JPT][hapmap]
rs2081727	1.00[JPT][hapmap]
rs25112	1.00[JPT][hapmap]
rs5994652	1.00[JPT][hapmap]
rs5994654	1.00[JPT][hapmap]
rs5998677	1.00[JPT][hapmap]
rs5998679	1.00[JPT][hapmap]
rs5998681	1.00[JPT][hapmap]
rs5998685	1.00[JPT][hapmap]
rs5998689	1.00[JPT][hapmap]
rs5998693	1.00[JPT][hapmap]
rs5998697	1.00[JPT][hapmap]
rs73162089	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10483168	SYN3	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33432400-33449800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr22:33438000-33445000	Weak transcription	Brain Anterior Caudate	brain
3	chr22:33438200-33441200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:33438600-33441200	Weak transcription	HepG2	liver
5	chr22:33438600-33443800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr22:33438800-33445600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:33439200-33440400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr22:33439200-33441200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr22:33439200-33441800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr22:33440000-33440400	Enhancers	Fetal Brain Female	brain
11	chr22:33440000-33440400	Enhancers	Left Ventricle	heart
12	chr22:33440000-33440600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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