Variant report

Variant	rs10483801
Chromosome Location	chr14:68117006-68117007
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68116450..68118216-chr14:68179269..68182045,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258618	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13343243	0.81[ASN][1000 genomes]
rs17249437	0.81[ASN][1000 genomes]
rs1885042	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs1997896	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4902503	0.81[ASN][1000 genomes]
rs6573788	0.80[CHB][hapmap];0.82[CHD][hapmap]
rs7149221	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.86[ASN][1000 genomes]
rs7151920	0.84[CHD][hapmap]
rs7160527	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8013117	0.80[CHB][hapmap];0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902068	chr14:68083133-68204876	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10483801	RDH11	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68088800-68123000	Weak transcription	Fetal Brain Male	brain
2	chr14:68109000-68130000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:68109000-68133200	Weak transcription	Stomach Mucosa	stomach
4	chr14:68109800-68124400	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:68109800-68126000	Strong transcription	Fetal Brain Female	brain
6	chr14:68111000-68126800	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr14:68111000-68135200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:68111400-68119000	Strong transcription	K562	blood
9	chr14:68111800-68126000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:68112000-68124200	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr14:68112000-68124400	Strong transcription	Brain Germinal Matrix	brain
12	chr14:68112000-68129400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:68112000-68129800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr14:68112200-68117400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:68112200-68120400	Strong transcription	Adipose Nuclei	Adipose
16	chr14:68112200-68121200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:68112200-68125000	Strong transcription	Brain Inferior Temporal Lobe	brain
18	chr14:68112200-68126800	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:68112200-68126800	Strong transcription	Placenta	Placenta
20	chr14:68112200-68127000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:68112200-68127000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:68112200-68127200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr14:68112200-68127200	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr14:68112200-68128000	Strong transcription	Dnd41	blood
25	chr14:68112200-68128200	Strong transcription	Primary T cells from cord blood	blood
26	chr14:68112200-68128200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:68112200-68129200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr14:68112400-68121400	Strong transcription	HepG2	liver
29	chr14:68112400-68124000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr14:68112400-68124400	Strong transcription	HSMM	muscle
31	chr14:68112400-68126600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:68112400-68126800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr14:68112400-68126800	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr14:68112400-68127000	Strong transcription	Brain Anterior Caudate	brain
35	chr14:68112400-68127000	Strong transcription	Duodenum Mucosa	Duodenum
36	chr14:68112400-68127800	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr14:68112400-68127800	Strong transcription	A549	lung
38	chr14:68112400-68128000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr14:68112400-68128400	Strong transcription	Liver	Liver
40	chr14:68112400-68129400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr14:68112400-68129800	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr14:68112400-68130000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:68112400-68130000	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr14:68112600-68117400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr14:68112600-68121000	Strong transcription	Ovary	ovary
46	chr14:68112600-68122000	Weak transcription	Right Atrium	heart
47	chr14:68112800-68119200	Strong transcription	HSMMtube	muscle
48	chr14:68112800-68124400	Strong transcription	Primary B cells from cord blood	blood
49	chr14:68112800-68126600	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr14:68112800-68128200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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