Variant report

Variant	rs10484265
Chromosome Location	chr6:35941099-35941100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35931318..35932845-chr6:35939951..35942186,2	MCF-7	breast:
2	chr6:35939637..35941539-chr6:36163436..36165909,2	K562	blood:
3	chr6:35930195..35932982-chr6:35939955..35941910,2	K562	blood:

Variant related genes	Relation type
ENSG00000246982	Chromatin interaction
ENSG00000096070	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17655247	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656051	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815806	0.86[MEX][hapmap]
rs34982564	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35534912	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61171193	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457879	0.86[MEX][hapmap];1.00[MKK][hapmap]
rs73405829	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs851021	0.86[MEX][hapmap]
rs851023	0.86[MEX][hapmap]
rs916344	0.85[MEX][hapmap]
rs916346	0.86[MEX][hapmap]
rs9470180	1.00[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10484265	SLC26A8	cis	multi-tissue	Pritchard

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35923200-35959600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:35935600-35941400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:35937800-35941800	Enhancers	Fetal Brain Male	brain
4	chr6:35938200-35941800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:35938400-35941200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:35938800-35941600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:35939200-35941600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:35939400-35941800	Enhancers	Fetal Stomach	stomach
9	chr6:35939600-35941800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:35939800-35941600	Enhancers	HepG2	liver
11	chr6:35940000-35941400	Enhancers	Stomach Mucosa	stomach
12	chr6:35940000-35941800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:35940000-35942200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:35940000-35943800	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:35940200-35941200	Enhancers	Colon Smooth Muscle	Colon
16	chr6:35940200-35941600	Enhancers	Liver	Liver
17	chr6:35940200-35941800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:35940200-35942200	Enhancers	Adipose Nuclei	Adipose
19	chr6:35940400-35941200	Enhancers	Colonic Mucosa	Colon
20	chr6:35940400-35941200	Enhancers	Fetal Brain Female	brain
21	chr6:35940400-35941200	Enhancers	Fetal Lung	lung
22	chr6:35940400-35941200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:35940400-35941400	Enhancers	K562	blood
24	chr6:35940400-35941600	Enhancers	Fetal Intestine Large	intestine
25	chr6:35940400-35941600	Enhancers	Fetal Intestine Small	intestine
26	chr6:35940400-35941600	Weak transcription	Placenta	Placenta
27	chr6:35940400-35941800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:35940600-35942200	Enhancers	Hela-S3	cervix
29	chr6:35940800-35941200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:35941000-35941600	Enhancers	Duodenum Mucosa	Duodenum

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