Variant report

Variant	rs10484429
Chromosome Location	chr6:48851550-48851551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10498777	0.81[ASN][1000 genomes]
rs11961380	0.86[ASN][1000 genomes]
rs11962371	0.81[AMR][1000 genomes]
rs11962463	0.81[ASN][1000 genomes]
rs11962526	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11963176	0.86[ASN][1000 genomes]
rs11965476	0.86[ASN][1000 genomes]
rs11966759	0.86[ASN][1000 genomes]
rs11968432	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11969013	0.86[ASN][1000 genomes]
rs11970453	0.86[ASN][1000 genomes]
rs11970592	0.86[ASN][1000 genomes]
rs12191943	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12203534	0.86[ASN][1000 genomes]
rs16878200	0.81[ASN][1000 genomes]
rs16878246	0.86[ASN][1000 genomes]
rs16878250	0.86[ASN][1000 genomes]
rs16878254	0.86[ASN][1000 genomes]
rs16878284	0.86[ASN][1000 genomes]
rs16878374	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17289986	0.81[ASN][1000 genomes]
rs1938175	0.86[ASN][1000 genomes]
rs1938177	0.86[ASN][1000 genomes]
rs1938178	0.86[ASN][1000 genomes]
rs1938188	0.86[ASN][1000 genomes]
rs1938189	0.86[ASN][1000 genomes]
rs1938200	0.86[ASN][1000 genomes]
rs2016176	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096426	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2154345	0.86[ASN][1000 genomes]
rs2186209	0.86[ASN][1000 genomes]
rs2186210	0.86[ASN][1000 genomes]
rs2396884	0.86[ASN][1000 genomes]
rs2396891	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34366744	0.86[ASN][1000 genomes]
rs4410722	0.81[ASN][1000 genomes]
rs4715104	0.86[ASN][1000 genomes]
rs55776194	0.91[AFR][1000 genomes]
rs55843069	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs56975981	0.81[ASN][1000 genomes]
rs57755228	0.86[ASN][1000 genomes]
rs59324209	0.86[ASN][1000 genomes]
rs59704925	0.81[ASN][1000 genomes]
rs60663846	0.86[ASN][1000 genomes]
rs61710291	0.86[ASN][1000 genomes]
rs6458635	0.86[ASN][1000 genomes]
rs6900138	0.81[ASN][1000 genomes]
rs6907951	0.86[ASN][1000 genomes]
rs6908335	0.86[ASN][1000 genomes]
rs6927078	0.86[ASN][1000 genomes]
rs6927218	0.86[ASN][1000 genomes]
rs6927449	0.86[ASN][1000 genomes]
rs6927828	0.86[ASN][1000 genomes]
rs6933051	0.86[ASN][1000 genomes]
rs72860717	0.86[ASN][1000 genomes]
rs72860719	0.86[ASN][1000 genomes]
rs72860720	0.86[ASN][1000 genomes]
rs72860732	0.86[ASN][1000 genomes]
rs72860735	0.86[ASN][1000 genomes]
rs72860736	0.81[ASN][1000 genomes]
rs72860742	0.86[ASN][1000 genomes]
rs72860744	0.86[ASN][1000 genomes]
rs72860749	0.86[ASN][1000 genomes]
rs72860750	0.86[ASN][1000 genomes]
rs72860752	0.86[ASN][1000 genomes]
rs72860755	0.86[ASN][1000 genomes]
rs72862035	0.86[ASN][1000 genomes]
rs72862038	0.86[ASN][1000 genomes]
rs72862051	0.86[ASN][1000 genomes]
rs72862062	0.86[ASN][1000 genomes]
rs72862067	0.86[ASN][1000 genomes]
rs72862069	0.86[ASN][1000 genomes]
rs72869092	0.81[ASN][1000 genomes]
rs72870818	0.81[ASN][1000 genomes]
rs72870857	0.81[ASN][1000 genomes]
rs72870893	0.81[ASN][1000 genomes]
rs72870898	0.81[ASN][1000 genomes]
rs72870901	0.81[ASN][1000 genomes]
rs72872305	0.81[ASN][1000 genomes]
rs72872308	0.81[ASN][1000 genomes]
rs72872314	0.81[ASN][1000 genomes]
rs72872343	0.81[ASN][1000 genomes]
rs72872348	0.81[ASN][1000 genomes]
rs72872354	0.81[ASN][1000 genomes]
rs72872357	0.81[ASN][1000 genomes]
rs72872364	0.81[ASN][1000 genomes]
rs72872366	0.81[ASN][1000 genomes]
rs72872368	0.81[ASN][1000 genomes]
rs73483369	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs760681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767482	0.81[ASN][1000 genomes]
rs7774329	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603037	chr6:48804862-48995221	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5292	chr6:48837853-48884078	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48832200-48944000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:48851200-48852600	Weak transcription	HUVEC	blood vessel

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