Variant report

Variant	rs10484434
Chromosome Location	chr6:26031613-26031614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:291)
CpG islands
(count:0)
Chromatin interactive
region (count:67)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:291 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr6:26030925-26034594	K562	blood:	n/a	n/a
2	FOXM1	chr6:26031396-26032782	GM12878	blood:	n/a	n/a
3	PML	chr6:26031407-26032587	MCF-7	breast:	n/a	n/a
4	STAT3	chr6:26031417-26031784	MCF10A-Er-Src	breast:	n/a	n/a
5	ZMIZ1	chr6:26030985-26033046	K562	blood:	n/a	n/a
6	SP4	chr6:26031370-26033356	H1-hESC	embryonic stem cell:	n/a	n/a
7	SIN3AK20	chr6:26031495-26031795	PFSK-1	brain:	n/a	n/a
8	CREB1	chr6:26030928-26034145	K562	blood:	n/a	chr6:26032480-26032493
9	MAFK	chr6:26031445-26034075	Hela-S3	cervix:	n/a	n/a
10	USF2	chr6:26031532-26032529	Hela-S3	cervix:	n/a	n/a
11	CEBPD	chr6:26029286-26034640	K562	blood:	n/a	n/a
12	BCLAF1	chr6:26031389-26032684	GM12878	blood:	n/a	n/a
13	POLR2A	chr6:26031406-26032539	GM12891	blood:	n/a	n/a
14	CHD1	chr6:26030593-26034261	H1-hESC	embryonic stem cell:	n/a	n/a
15	STAT5A	chr6:26031380-26032704	GM12878	blood:	n/a	n/a
16	POLR2A	chr6:26030860-26034038	Hela-S3	cervix:	n/a	n/a
17	SIN3AK20	chr6:26031553-26032523	A549	lung:	n/a	n/a
18	POLR2A	chr6:26030971-26032568	GM12892	blood:	n/a	n/a
19	NR2F2	chr6:26030007-26034696	K562	blood:	n/a	n/a
20	POLR2A	chr6:26031147-26032701	ProgFib	skin:	n/a	n/a
21	POLR2A	chr6:26031104-26032531	U87	brain:	n/a	n/a
22	MYBL2	chr6:26031451-26034257	HepG2	liver:	n/a	chr6:26031699-26031709
23	SIX5	chr6:26031487-26032715	A549	lung:	n/a	n/a
24	BCL3	chr6:26031454-26031868	K562	blood:	n/a	n/a
25	POLR2A	chr6:26031414-26032490	GM12878	blood:	n/a	n/a
26	TCF12	chr6:26031519-26033383	ECC-1	luminal epithelium:	n/a	n/a
27	CEBPB	chr6:26031391-26034289	GM12878	blood:	n/a	n/a
28	POLR2A	chr6:26031008-26034306	GM12878	blood:	n/a	n/a
29	IRF1	chr6:26031536-26033016	K562	blood:	n/a	n/a
30	POLR2A	chr6:26025305-26034609	H1-hESC	embryonic stem cell:	n/a	n/a
31	REST	chr6:26031434-26032548	A549	lung:	n/a	n/a
32	RUNX3	chr6:26031395-26034651	GM12878	blood:	n/a	n/a
33	BCL3	chr6:26031424-26032509	A549	lung:	n/a	n/a
34	ELK1	chr6:26030965-26034021	K562	blood:	n/a	n/a
35	TRIM28	chr6:26031407-26034348	K562	blood:	n/a	n/a
36	POLR2A	chr6:26031417-26032502	HEK293	kidney:	n/a	n/a
37	HEY1	chr6:26024804-26034728	K562	blood:	n/a	chr6:26026612-26026621 chr6:26032481-26032490 chr6:26026610-26026619
38	POLR2A	chr6:26031123-26032514	GM12892	blood:	n/a	n/a
39	CREB1	chr6:26031394-26034484	GM12878	blood:	n/a	chr6:26032480-26032493
40	YY1	chr6:26031460-26032444	K562	blood:	n/a	n/a
41	POLR2A	chr6:26025624-26032504	K562	blood:	n/a	n/a
42	POLR2A	chr6:26031397-26032668	U87	brain:	n/a	n/a
43	EGR1	chr6:26031393-26032451	K562	blood:	n/a	n/a
44	MYBL2	chr6:26031291-26034345	HepG2	liver:	n/a	chr6:26031699-26031709
45	ZBTB33	chr6:26031402-26034523	SK-N-SH	brain:	n/a	chr6:26033544-26033559
46	TBL1XR1	chr6:26029454-26033106	K562	blood:	n/a	n/a
47	REST	chr6:26031410-26032443	A549	lung:	n/a	n/a
48	BCLAF1	chr6:26031396-26032515	GM12878	blood:	n/a	n/a
49	POLR2A	chr6:26031559-26032530	NB4	blood:	n/a	n/a
50	POLR2A	chr6:26031117-26032503	IMR90	lung:	n/a	n/a

No data

(count:67 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:26024607..26035097-chr6:27857610..27864739,17	K562	blood:
2	chr6:26030987..26033911-chr6:27775550..27778920,4	K562	blood:
3	chr6:26029475..26032129-chr6:27798602..27801297,3	K562	blood:
4	chr6:26030558..26034410-chr6:27100755..27103505,3	MCF-7	breast:
5	chr1:150208359..150209046-chr6:26031193..26031756,2	Hela-S3	cervix:
6	chr19:3975952..3978559-chr6:26029120..26031820,2	K562	blood:
7	chr6:26030055..26033247-chr6:27790818..27793416,3	MCF-7	breast:
8	chr11:67272994..67275730-chr6:26029475..26032362,2	K562	blood:
9	chr6:26029984..26031821-chr6:27485687..27487793,2	K562	blood:
10	chr10:21813597..21815483-chr6:26030304..26033115,2	K562	blood:
11	chr11:65189745..65191975-chr6:26031207..26033394,2	K562	blood:
12	chr19:48111729..48112457-chr6:26031279..26031845,2	HCT-116	colon:
13	chr6:26029311..26033760-chr6:27774369..27777821,5	MCF-7	breast:
14	chr6:26030091..26032041-chr6:27775744..27779054,3	MCF-7	breast:
15	chr6:26029727..26031946-chr6:43910526..43912489,2	K562	blood:
16	chr6:26029156..26033137-chr6:27858699..27862567,9	K562	blood:
17	chr6:26030891..26034608-chr6:26223354..26228378,6	MCF-7	breast:
18	chr6:26017750..26036418-chr6:26116875..26130553,65	MCF-7	breast:
19	chr6:24657843..24659411-chr6:26030183..26032461,2	K562	blood:
20	chr6:26030782..26033765-chr6:30585161..30587515,2	MCF-7	breast:
21	chr6:26029513..26031973-chr6:26575071..26576731,2	K562	blood:
22	chr11:85540245..85541806-chr6:26029781..26032267,2	MCF-7	breast:
23	chr16:31190260..31192807-chr6:26031049..26033016,2	K562	blood:
24	chr16:31191426..31192027-chr6:26031498..26032205,2	Hela-S3	cervix:
25	chr6:26030052..26032000-chr6:27859191..27860757,2	MCF-7	breast:
26	chr1:205600408..205601102-chr6:26031500..26032362,2	Hela-S3	cervix:
27	chr6:26029648..26033370-chr6:27113347..27116266,3	MCF-7	breast:
28	chr6:26029982..26034393-chr6:27104962..27111668,7	K562	blood:
29	chr6:26029609..26032521-chr6:27805360..27808240,3	MCF-7	breast:
30	chr5:58529142..58529735-chr6:26031124..26031817,2	Hela-S3	cervix:
31	chr6:26030302..26034233-chr6:34203696..34206879,3	K562	blood:
32	chr6:26031185..26034143-chr6:26233658..26236359,2	MCF-7	breast:
33	chr6:26024161..26035534-chr6:27093020..27104638,25	K562	blood:
34	chr6:26031607..26034880-chr6:27837430..27841431,3	K562	blood:
35	chr6:26019620..26034082-chr6:26100355..26110400,33	MCF-7	breast:
36	chr6:25724700..25728805-chr6:26024464..26033486,16	K562	blood:
37	chr17:56075959..56078294-chr6:26029823..26031811,2	MCF-7	breast:
38	chr6:26029300..26031904-chr6:27779187..27780986,2	K562	blood:
39	chr11:65268418..65270966-chr6:26030658..26032363,2	K562	blood:
40	chr6:26029763..26032265-chr6:27782038..27784376,2	MCF-7	breast:
41	chr6:26026115..26036040-chr6:27097153..27104835,26	K562	blood:
42	chr12:76741870..76742407-chr6:26031466..26032068,2	Hela-S3	cervix:
43	chr6:26030908..26032458-chr6:74228984..74230943,2	K562	blood:
44	chr3:39448044..39450994-chr6:26031189..26032837,2	K562	blood:
45	chr6:26029987..26032449-chr6:27112365..27115475,3	MCF-7	breast:
46	chr15:93353515..93354246-chr6:26031188..26031927,2	Hela-S3	cervix:
47	chr5:137804423..137807174-chr6:26028881..26031632,2	K562	blood:
48	chr6:26019525..26036768-chr6:26154463..26163826,38	MCF-7	breast:
49	chr6:26029982..26033364-chr6:27104962..27109285,6	K562	blood:
50	chr20:52210370..52212391-chr6:26029990..26032325,2	MCF-7	breast:

No data

Variant related genes	Relation type
HIST1H4B	TF binding region
ENSG00000233224	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000167797	Chromatin interaction
ENSG00000164508	Chromatin interaction
ENSG00000197914	Chromatin interaction
ENSG00000124575	Chromatin interaction
ENSG00000238423	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000156508	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000199568	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000100711	Chromatin interaction
ENSG00000198558	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000201801	Chromatin interaction
ENSG00000208037	Chromatin interaction
ENSG00000206760	Chromatin interaction
ENSG00000146047	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000246225	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000110697	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000198242	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000187475	Chromatin interaction
ENSG00000170791	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000182572	Chromatin interaction
ENSG00000267131	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000171940	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000168495	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000108559	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000181690	Chromatin interaction
ENSG00000167658	Chromatin interaction
ENSG00000111802	Chromatin interaction
ENSG00000168028	Chromatin interaction
ENSG00000179941	Chromatin interaction
ENSG00000158711	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000204568	Chromatin interaction
ENSG00000129197	Chromatin interaction
ENSG00000063169	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000198168	Chromatin interaction
ENSG00000180592	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000126215	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000196966	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000197903	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10484431	0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11751732	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11755492	0.82[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11756400	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11757088	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11758372	0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11758378	0.97[EUR][1000 genomes]
rs11759668	0.90[CEU][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs11961143	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11964886	1.00[JPT][hapmap]
rs11965426	0.91[EUR][1000 genomes]
rs11969868	1.00[JPT][hapmap]
rs16891142	1.00[JPT][hapmap]
rs17531978	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17596719	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs185635	1.00[JPT][hapmap]
rs199729	1.00[JPT][hapmap]
rs199738	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs2051538	0.90[CEU][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes]
rs2071302	1.00[JPT][hapmap]
rs2181802	1.00[YRI][hapmap]
rs2230654	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36125084	0.85[EUR][1000 genomes]
rs41266783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141885	1.00[YRI][hapmap]
rs55661658	0.88[EUR][1000 genomes]
rs59281021	0.90[EUR][1000 genomes]
rs61289224	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62000984	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62394540	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62394542	0.95[EUR][1000 genomes]
rs62394550	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66505449	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66536062	0.91[EUR][1000 genomes]
rs6906460	0.90[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6925912	0.89[CEU][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs6935470	0.90[EUR][1000 genomes]
rs7746105	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs7757646	1.00[JPT][hapmap]
rs7773526	0.82[EUR][1000 genomes]
rs9358908	1.00[YRI][hapmap]
rs9689245	0.82[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv432857	chr6:25957109-26072445	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	451 gene(s)	inside rSNPs	diseases
8	nsv1015627	chr6:25973495-26100483	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
9	nsv538164	chr6:25973495-26100483	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
10	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
11	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
12	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
13	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
14	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
15	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
16	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
17	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
18	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
19	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
20	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
21	nsv1026692	chr6:26027408-26067081	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	363 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
HIV-1 viral setpoint	22174851	GWAS catalog

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10484434	HIST1H1D	cis	cerebellum	SCAN
rs10484434	BTN2A2	cis	cerebellum	SCAN
rs10484434	ACSM1	trans	parietal	SCAN
rs10484434	ZSCAN23	cis	parietal	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26027600-26031800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:26027600-26031800	Weak transcription	Esophagus	oesophagus
3	chr6:26027600-26031800	Weak transcription	Gastric	stomach
4	chr6:26027600-26031800	Weak transcription	Left Ventricle	heart
5	chr6:26027600-26031800	Weak transcription	Lung	lung
6	chr6:26027600-26031800	Weak transcription	Pancreas	Pancrea
7	chr6:26027600-26031800	Weak transcription	Small Intestine	intestine
8	chr6:26027600-26033400	Weak transcription	Spleen	Spleen
9	chr6:26027800-26031800	Weak transcription	Right Ventricle	heart
10	chr6:26027800-26032000	Weak transcription	Fetal Brain Male	brain
11	chr6:26028000-26031800	Weak transcription	Brain Angular Gyrus	brain
12	chr6:26028000-26031800	Weak transcription	Right Atrium	heart
13	chr6:26028000-26031800	Weak transcription	HSMMtube	muscle
14	chr6:26028200-26031800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:26028200-26031800	Weak transcription	Brain Substantia Nigra	brain
16	chr6:26028200-26031800	Weak transcription	Placenta	Placenta
17	chr6:26028200-26031800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:26028400-26031800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:26028400-26031800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr6:26029200-26031800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:26029800-26032600	Active TSS	K562	blood
22	chr6:26030200-26035000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:26030400-26033400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:26030400-26034800	Active TSS	H9 Cell Line	embryonic stem cell
25	chr6:26030600-26032400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:26030600-26032600	Active TSS	Fetal Thymus	thymus
27	chr6:26030600-26032800	Active TSS	GM12878-XiMat	blood
28	chr6:26030600-26034200	Active TSS	Thymus	Thymus
29	chr6:26030600-26034400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:26030600-26034400	Active TSS	A549	lung
31	chr6:26030600-26034600	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr6:26030800-26032600	Active TSS	HMEC	breast
33	chr6:26030800-26033000	Active TSS	Hela-S3	cervix
34	chr6:26030800-26034400	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr6:26030800-26034600	Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr6:26030800-26034600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:26030800-26034600	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr6:26030800-26034600	Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr6:26030800-26035000	Active TSS	H1 Cell Line	embryonic stem cell
40	chr6:26031000-26031800	Active TSS	Fetal Brain Female	brain
41	chr6:26031000-26032600	Active TSS	Fetal Kidney	kidney
42	chr6:26031000-26032600	Active TSS	NH-A	brain
43	chr6:26031000-26032600	Active TSS	NHDF-Ad	bronchial
44	chr6:26031000-26032600	Active TSS	NHEK	skin
45	chr6:26031000-26034200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:26031000-26034600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:26031000-26034600	Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr6:26031200-26031800	Active TSS	HepG2	liver
49	chr6:26031200-26032600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:26031200-26032800	Active TSS	NHLF	lung

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