Variant report

Variant	rs10484550
Chromosome Location	chr6:30094856-30094857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16897133	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884056	chr6:30089623-30097818	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30092400-30096200	Weak transcription	Hela-S3	cervix
2	chr6:30092600-30097200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:30094400-30096000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:30094600-30096000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:30094600-30096200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:30094800-30095000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:30094800-30095000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:30094800-30095200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
9	chr6:30094800-30096000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
10	chr6:30094800-30096200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr6:30094800-30096200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr6:30094800-30096200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr6:30094800-30096200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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