Variant report

Variant	rs10484699
Chromosome Location	chr6:145729784-145729785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10484701	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11155414	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1118771	0.81[ASN][1000 genomes]
rs12190268	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12195530	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196549	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12199325	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12203531	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12204968	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12205338	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12208257	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12208709	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12210074	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12215422	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12215687	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13199909	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201024	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13211401	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13213905	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13215809	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13219443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219674	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1396641	0.89[ASN][1000 genomes]
rs1509205	0.81[ASN][1000 genomes]
rs1509210	0.81[ASN][1000 genomes]
rs1582130	0.81[ASN][1000 genomes]
rs1832375	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1856270	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2328686	0.81[ASN][1000 genomes]
rs34612213	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34658504	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4896807	0.81[ASN][1000 genomes]
rs6570685	0.81[ASN][1000 genomes]
rs6925779	0.93[ASN][1000 genomes]
rs6937347	0.81[ASN][1000 genomes]
rs7452286	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7739067	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7746939	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7748655	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7752263	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7764645	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7765055	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9285507	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9390321	0.89[ASN][1000 genomes]
rs9403700	0.89[ASN][1000 genomes]
rs9403701	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145728400-145730600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:145728400-145732800	Weak transcription	Stomach Mucosa	stomach
3	chr6:145729200-145730000	Enhancers	NHDF-Ad	bronchial

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