Variant report

Variant	rs10484803
Chromosome Location	chr6:143915677-143915678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12527327	1.00[CEU][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13194572	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13199861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17072795	0.87[ASN][1000 genomes]
rs1890405	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34979105	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811095	0.81[JPT][hapmap]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143895600-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:143899400-143918000	Weak transcription	Spleen	Spleen
3	chr6:143899800-143919200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:143900800-143918200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:143901200-143918000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:143903400-143918200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:143903600-143918600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:143908000-143915800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:143910400-143918200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:143910600-143918000	Weak transcription	Right Atrium	heart
11	chr6:143911200-143929200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:143911800-143915800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:143912200-143916800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:143912800-143918200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:143913000-143916400	Weak transcription	Fetal Intestine Large	intestine
16	chr6:143913000-143918800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:143913200-143919000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:143913200-143928400	Weak transcription	Aorta	Aorta
19	chr6:143913800-143916400	Weak transcription	Placenta	Placenta
20	chr6:143914400-143917400	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr6:143914800-143919400	Weak transcription	Stomach Mucosa	stomach
22	chr6:143915400-143916000	Enhancers	Gastric	stomach
23	chr6:143915400-143916200	Enhancers	Ovary	ovary
24	chr6:143915600-143915800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:143915600-143915800	Enhancers	Fetal Intestine Small	intestine
26	chr6:143915600-143916000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:143915600-143916600	Enhancers	NHLF	lung
28	chr6:143915600-143916800	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr6:143915600-143917000	Enhancers	Hela-S3	cervix
30	chr6:143915600-143917200	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr6:143915600-143918400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:143915600-143919000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links