Variant report

Variant	rs10485540
Chromosome Location	chr20:15697748-15697749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10485541	0.91[CHD][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs11696702	0.89[CHB][hapmap]
rs12106137	0.83[EUR][1000 genomes]
rs16996441	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15695600-15698200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr20:15696800-15698000	Enhancers	Brain Germinal Matrix	brain
3	chr20:15697000-15698000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr20:15697200-15698000	Weak transcription	Ovary	ovary
5	chr20:15697400-15697800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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