Variant report

Variant	rs10485633
Chromosome Location	chr20:22680533-22680534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6113783	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833943	chr20:22657016-22703454	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22673000-22680600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr20:22678800-22681200	Enhancers	NHEK	skin
3	chr20:22679000-22681400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:22679000-22682800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr20:22679200-22681800	Enhancers	HMEC	breast
6	chr20:22679200-22682000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr20:22679800-22681400	Enhancers	Aorta	Aorta
8	chr20:22679800-22681400	Enhancers	Right Atrium	heart
9	chr20:22680000-22681000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr20:22680400-22681600	Enhancers	Fetal Heart	heart
11	chr20:22680400-22681600	Enhancers	Left Ventricle	heart
12	chr20:22680400-22681600	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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