Variant report

Variant	rs10485693
Chromosome Location	chr20:41027987-41027988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1033414	0.91[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs12624949	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16986892	0.91[MEX][hapmap];0.87[MKK][hapmap]
rs16986907	0.83[CEU][hapmap]
rs35727512	0.81[AMR][1000 genomes]
rs6102820	0.90[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6102827	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs6102830	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs62203476	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62203479	0.84[EUR][1000 genomes]
rs67488810	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41022400-41028600	Weak transcription	Adipose Nuclei	Adipose
2	chr20:41022400-41039400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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