Variant report

Variant	rs10486052
Chromosome Location	chr7:14234531-14234532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10259246	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10486048	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11771562	0.90[CEU][hapmap]
rs16878094	0.88[JPT][hapmap]
rs17167956	1.00[CEU][hapmap];0.88[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17167960	0.88[JPT][hapmap]
rs17695940	0.90[CEU][hapmap]
rs17707695	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17763397	0.90[CEU][hapmap]
rs17763495	0.81[CEU][hapmap]
rs17763518	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs17764028	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2108206	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1015312	chr7:14092753-14266917	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1021056	chr7:14162525-14269443	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1025437	chr7:14226741-14295671	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14231600-14234800	Weak transcription	Left Ventricle	heart
2	chr7:14231600-14236600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:14231800-14235600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:14231800-14235600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:14232200-14234800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:14233600-14237800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:14233800-14234600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:14233800-14238000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:14234400-14234600	Enhancers	Brain Anterior Caudate	brain
10	chr7:14234400-14234600	Enhancers	Brain Substantia Nigra	brain
11	chr7:14234400-14234800	Enhancers	Brain Germinal Matrix	brain
12	chr7:14234400-14235200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr7:14234400-14235200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:14234400-14236000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:14234400-14236000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:14234400-14236000	Enhancers	Brain Cingulate Gyrus	brain
17	chr7:14234400-14237200	Enhancers	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links