Variant report

Variant	rs10486154
Chromosome Location	chr7:11615908-11615909
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10486153	0.83[CEU][hapmap];0.89[CHD][hapmap];0.93[JPT][hapmap]
rs12699236	0.89[ASN][1000 genomes]
rs12699238	0.88[CEU][hapmap];0.83[GIH][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes]
rs12699240	0.80[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs12699241	0.84[CEU][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12699242	0.80[ASW][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12699243	0.88[CEU][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs12699244	0.88[CEU][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs12699245	0.88[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs12699246	0.88[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs12699247	0.88[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12699248	0.94[ASN][1000 genomes]
rs13229007	0.83[CEU][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs13229378	0.93[CEU][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs13229567	0.85[ASN][1000 genomes]
rs13240026	0.94[MEX][hapmap]
rs2040816	0.83[CEU][hapmap]
rs68035468	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs764195	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs7777369	0.84[GIH][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs7785852	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs929302	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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