Variant report

Variant	rs10486772
Chromosome Location	chr7:15725104-15725105
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:15725101-15725110	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr7:15725077-15725752	H1-neurons	neurons:	n/a	n/a
3	CEBPB	chr7:15724934-15725159	Hela-S3	cervix:	n/a	chr7:15725044-15725053 chr7:15725043-15725054 chr7:15725044-15725053 chr7:15725044-15725053 chr7:15725042-15725055 chr7:15725044-15725053 chr7:15725042-15725053
4	SIN3A	chr7:15724992-15725710	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAX	chr7:15725015-15727240	H1-hESC	embryonic stem cell:	n/a	chr7:15726423-15726432 chr7:15726648-15726656 chr7:15725326-15725339 chr7:15725328-15725335 chr7:15725180-15725190
6	SUZ12	chr7:15724111-15727909	NT2-D1	testis:	n/a	n/a
7	CEBPB	chr7:15724875-15725240	HepG2	liver:	n/a	chr7:15725044-15725053 chr7:15725043-15725054 chr7:15725044-15725053 chr7:15725044-15725053 chr7:15725042-15725055 chr7:15725044-15725053 chr7:15725042-15725053
8	MYC	chr7:15725050-15725236	H1-hESC	embryonic stem cell:	n/a	chr7:15725180-15725190
9	CEBPB	chr7:15724896-15725214	K562	blood:	n/a	chr7:15725044-15725053 chr7:15725043-15725054 chr7:15725044-15725053 chr7:15725044-15725053 chr7:15725042-15725055 chr7:15725044-15725053 chr7:15725042-15725053
10	TCF7L2	chr7:15724899-15725571	HEK293	kidney:	n/a	n/a
11	KAP1	chr7:15724606-15726663	HEK293	kidney:	n/a	n/a
12	MAX	chr7:15724993-15725799	H1-hESC	embryonic stem cell:	n/a	chr7:15725326-15725339 chr7:15725328-15725335 chr7:15725180-15725190
13	CEBPB	chr7:15724880-15725230	A549	lung:	n/a	chr7:15725044-15725053 chr7:15725043-15725054 chr7:15725044-15725053 chr7:15725044-15725053 chr7:15725042-15725055 chr7:15725044-15725053 chr7:15725042-15725053
14	E2F6	chr7:15724928-15727574	H1-hESC	embryonic stem cell:	n/a	chr7:15725496-15725510 chr7:15726762-15726769
15	CEBPB	chr7:15724582-15725371	H1-hESC	embryonic stem cell:	n/a	chr7:15725044-15725053 chr7:15725043-15725054 chr7:15725044-15725053 chr7:15725044-15725053 chr7:15725042-15725055 chr7:15725044-15725053 chr7:15725042-15725053
16	POLR2A	chr7:15724964-15725793	H1-neurons	neurons:	n/a	n/a
17	CEBPB	chr7:15724858-15725241	IMR90	lung:	n/a	chr7:15725044-15725053 chr7:15725043-15725054 chr7:15725044-15725053 chr7:15725044-15725053 chr7:15725042-15725055 chr7:15725044-15725053 chr7:15725042-15725053

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:15725086-15725136	K562	blood:	n/a
2	chr7:15725086-15725136	MCF-7	breast:	n/a
3	chr7:15725086-15725136	BJ	skin:	n/a
4	chr7:15725086-15725136	HRE	kidney:	n/a
5	chr7:15725086-15725136	BE2_C	brain:	n/a
6	chr7:15725086-15725136	HCT-116	colon:	n/a
7	chr7:15725086-15725136	HAEpiC	amniotic membrane:	n/a
8	chr7:15725086-15725136	H1-hESC	embryonic stem cell:	embryo
9	chr7:15725086-15725136	IMR90	lung:	fetal
10	chr7:15725086-15725136	ECC-1	luminal epithelium:	n/a
11	chr7:15725086-15725136	AG04450	lung:	fetal
12	chr7:15725086-15725136	MCF10A-Er-Src	breast:	n/a
13	chr7:15725086-15725136	GM06990	blood:	n/a
14	chr7:15725086-15725136	LNCaP	prostate:	n/a
15	chr7:15725086-15725136	AG10803	skin:	n/a
16	chr7:15725086-15725136	HepG2	liver:	n/a
17	chr7:15725086-15725136	HL-60	blood:	n/a
18	chr7:15725086-15725136	HCF	heart:	n/a
19	chr7:15725086-15725136	HUVEC	blood vessel:	n/a
20	chr7:15725086-15725136	HCPEpiC	choroid plexus:	n/a
21	chr7:15725086-15725136	T-47D	breast:	n/a
22	chr7:15725086-15725136	AG09309	skin:	n/a
23	chr7:15725086-15725136	SK-N-MC	brain:	n/a
24	chr7:15725086-15725136	GM12891	blood:	n/a
25	chr7:15725086-15725136	PrEC	prostate:	n/a
26	chr7:15725086-15725136	HRPEpiC	eye:	n/a
27	chr7:15725086-15725136	HPAEpiC	pulmonary alveolar:	n/a
28	chr7:15725086-15725136	NHBE	bronchial:	n/a
29	chr7:15725086-15725136	GM12892	blood:	n/a
30	chr7:15725086-15725136	NB4	blood:	n/a
31	chr7:15725086-15725136	NH-A	brain:	n/a
32	chr7:15725086-15725136	HIPEpiC	eye:	n/a
33	chr7:15725086-15725136	Hepatocyte	liver:	n/a
34	chr7:15725086-15725136	AG04449	skin:	fetal
35	chr7:15725086-15725136	HCM	heart:	n/a
36	chr7:15725086-15725136	HMEC	breast:	n/a
37	chr7:15725086-15725136	GM19239	blood:	n/a
38	chr7:15725086-15725136	RPTEC	kidney:	n/a
39	chr7:15725086-15725136	AG09319	gingival:	n/a
40	chr7:15725086-15725136	HEEpiC	esophagus:	n/a
41	chr7:15725086-15725136	Jurkat	blood:	n/a
42	chr7:15725086-15725136	SAEC	small airway:	n/a
43	chr7:15725086-15725136	NHDF-neo	bronchial:	n/a
44	chr7:15725086-15725136	A549	lung:	n/a
45	chr7:15725086-15725136	HRCEpiC	kidney:	n/a
46	chr7:15725086-15725136	Hela-S3	cervix:	n/a
47	chr7:15725086-15725136	PFSK-1	brain:	n/a
48	chr7:15725086-15725136	SK-N-SH_RA	brain:	n/a
49	chr7:15725086-15725136	CMK	blood:	n/a
50	chr7:15725086-15725136	HNPCEpiC	eye:	n/a

Variant related genes	Relation type
ENSG00000229108	TF binding region
ENSG00000229108	CpG island

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10486774	0.86[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs10486776	0.82[JPT][hapmap]
rs1050290	0.92[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11975534	0.80[AFR][1000 genomes]
rs740566	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv830911	chr7:15666307-15817662	Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv428501	chr7:15666307-15817662	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv887736	chr7:15716973-15752122	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv887737	chr7:15716973-15753487	Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15718200-15725200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:15718600-15726200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:15719000-15728600	Active TSS	NHDF-Ad	bronchial
4	chr7:15720000-15726000	Active TSS	HUVEC	blood vessel
5	chr7:15720000-15729800	Active TSS	Right Atrium	heart
6	chr7:15721400-15725800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:15721600-15726600	Active TSS	Osteobl	bone
8	chr7:15722400-15725800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:15722400-15728400	Bivalent/Poised TSS	Fetal Lung	lung
10	chr7:15723600-15725200	Active TSS	NHLF	lung
11	chr7:15723600-15725600	Active TSS	Psoas Muscle	Psoas
12	chr7:15723800-15725200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
13	chr7:15723800-15725800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
14	chr7:15723800-15726200	Active TSS	Right Ventricle	heart
15	chr7:15723800-15726400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
16	chr7:15723800-15728200	Bivalent/Poised TSS	Left Ventricle	heart
17	chr7:15723800-15728200	Active TSS	Ovary	ovary
18	chr7:15723800-15728600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
19	chr7:15724000-15725400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:15724000-15725400	Bivalent/Poised TSS	Fetal Thymus	thymus
21	chr7:15724000-15725800	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
22	chr7:15724400-15725200	Bivalent/Poised TSS	Placenta	Placenta
23	chr7:15724400-15725200	Bivalent/Poised TSS	Fetal Stomach	stomach
24	chr7:15724600-15725200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
25	chr7:15724600-15725200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
26	chr7:15724600-15725200	Bivalent Enhancer	Fetal Heart	heart
27	chr7:15724600-15725200	Active TSS	Pancreas	Pancrea
28	chr7:15724600-15725200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
29	chr7:15724600-15725400	Active TSS	Esophagus	oesophagus
30	chr7:15724600-15726000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
31	chr7:15724600-15726200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
32	chr7:15724600-15726200	Active TSS	Brain Substantia Nigra	brain
33	chr7:15724600-15726400	Bivalent/Poised TSS	Fetal Kidney	kidney
34	chr7:15724600-15726600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
35	chr7:15724600-15727600	Active TSS	Aorta	Aorta
36	chr7:15724600-15728200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
37	chr7:15724800-15725200	Active TSS	Liver	Liver
38	chr7:15724800-15725200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
39	chr7:15724800-15726000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
40	chr7:15724800-15726000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
41	chr7:15724800-15726600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
42	chr7:15724800-15726600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
43	chr7:15724800-15727000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
44	chr7:15724800-15728200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
45	chr7:15725000-15725200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr7:15725000-15725200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr7:15725000-15725200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:15725000-15725200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:15725000-15725200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
50	chr7:15725000-15725200	Bivalent/Poised TSS	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links