Variant report

Variant	rs10486998
Chromosome Location	chr7:87416325-87416326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12666125	1.00[AMR][1000 genomes]
rs12666563	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12666742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12667129	1.00[AMR][1000 genomes]
rs12668088	1.00[AMR][1000 genomes]
rs12669259	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12670317	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12670560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12674310	1.00[AMR][1000 genomes]
rs16885871	1.00[AMR][1000 genomes]
rs17146782	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17146787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17149850	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap]
rs17149854	1.00[CHB][hapmap]
rs17149866	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17149905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17149907	0.86[CHB][hapmap];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17149925	0.94[ASN][1000 genomes]
rs17149933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17149957	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17149966	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17150051	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs17150134	1.00[AMR][1000 genomes]
rs17160359	1.00[CEU][hapmap]
rs2188524	1.00[GIH][hapmap]
rs2188829	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2235074	0.86[CHB][hapmap]
rs2237536	1.00[AMR][1000 genomes]
rs2237538	1.00[AMR][1000 genomes]
rs2282944	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2282945	1.00[AMR][1000 genomes]
rs2282946	1.00[AMR][1000 genomes]
rs2285648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2299191	1.00[AMR][1000 genomes]
rs28381715	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28381752	1.00[MEX][hapmap]
rs28381781	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.89[MKK][hapmap]
rs28381789	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap]
rs28381796	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.89[MKK][hapmap]
rs28381802	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs3213619	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs3213633	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35229105	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs36187880	1.00[AMR][1000 genomes]
rs3747802	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4728707	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap]
rs4728719	1.00[AMR][1000 genomes]
rs4728721	1.00[AMR][1000 genomes]
rs4728723	1.00[AMR][1000 genomes]
rs971485	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs973445	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv888695	chr7:87328502-87430669	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv528078	chr7:87397345-87418861	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv970416	chr7:87407303-87419070	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87409200-87419400	Weak transcription	Left Ventricle	heart

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