Variant report

Variant	rs10487865
Chromosome Location	chr7:83610726-83610727
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1029887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17158416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17158423	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17158436	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801586	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3801591	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3801595	1.00[CEU][hapmap]
rs3823908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6467974	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7796609	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv888622	chr7:83526743-83631376	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1020784	chr7:83577402-83687108	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888623	chr7:83596683-83687622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888624	chr7:83596683-83698177	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83588800-83624600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:83589000-83654600	Weak transcription	Fetal Stomach	stomach
3	chr7:83589200-83616600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:83591000-83624200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:83591000-83633800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:83591200-83614400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:83591200-83615800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:83591200-83634200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:83591200-83638400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:83591200-83654600	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:83591800-83624600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:83592600-83626400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:83599800-83611000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:83600000-83613000	Weak transcription	Fetal Kidney	kidney
15	chr7:83604400-83614800	Weak transcription	Fetal Lung	lung
16	chr7:83606000-83654000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:83606200-83613000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:83606200-83643200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:83607600-83611000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:83608000-83613200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:83609400-83612200	Strong transcription	NHDF-Ad	bronchial
22	chr7:83609800-83650400	Weak transcription	NHLF	lung
23	chr7:83610000-83611000	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:83610200-83611600	ZNF genes & repeats	Colon Smooth Muscle	Colon
25	chr7:83610200-83612600	Weak transcription	Fetal Intestine Large	intestine
26	chr7:83610200-83642200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr7:83610200-83673000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:83610400-83611400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:83610400-83611800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:83610600-83610800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:83610600-83611600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:83610600-83611600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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