Variant report

Variant	rs10489052
Chromosome Location	chr4:149902599-149902600
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1014727	0.99[ASN][1000 genomes]
rs1029395	0.99[ASN][1000 genomes]
rs17725235	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17781307	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2008203	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2188536	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2358674	0.98[ASN][1000 genomes]
rs4527454	0.83[ASN][1000 genomes]
rs724043	0.98[ASN][1000 genomes]
rs724044	0.98[ASN][1000 genomes]
rs739514	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461677	chr4:149794284-149903982	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595686	chr4:149794284-149903982	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470083	chr4:149817052-149903982	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149899600-149903000	Enhancers	Colon Smooth Muscle	Colon
2	chr4:149899600-149903000	Enhancers	Fetal Stomach	stomach
3	chr4:149900200-149902800	Enhancers	Stomach Smooth Muscle	stomach
4	chr4:149900200-149903200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:149900800-149902600	Enhancers	Rectal Smooth Muscle	rectum
6	chr4:149901800-149902600	Enhancers	Adipose Nuclei	Adipose
7	chr4:149901800-149902800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:149901800-149902800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:149901800-149902800	Enhancers	Fetal Lung	lung
10	chr4:149902000-149902800	Enhancers	Brain Germinal Matrix	brain
11	chr4:149902000-149902800	Enhancers	Fetal Muscle Leg	muscle
12	chr4:149902000-149902800	Enhancers	Left Ventricle	heart
13	chr4:149902000-149905200	Enhancers	Primary B cells from peripheral blood	blood
14	chr4:149902200-149903600	Enhancers	Primary B cells from cord blood	blood
15	chr4:149902400-149902800	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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