Variant report

Variant	rs10489114
Chromosome Location	chr4:103511388-103511389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:103511014-103511495	GM12891	blood:	n/a	n/a
2	POLR2A	chr4:103511041-103511485	GM12891	blood:	n/a	n/a
3	POLR2A	chr4:103510986-103511607	GM12878	blood:	n/a	n/a
4	POLR2A	chr4:103511242-103511461	HepG2	liver:	n/a	n/a
5	POLR2A	chr4:103511031-103511648	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
NFKB1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4648018	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4648069	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9790601	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830020	chr4:103387343-103581284	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1003490	chr4:103391483-103521772	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103473400-103524600	Weak transcription	Fetal Brain Male	brain
2	chr4:103478200-103511800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:103483000-103518600	Weak transcription	Small Intestine	intestine
4	chr4:103483200-103516600	Weak transcription	Brain Angular Gyrus	brain
5	chr4:103483400-103541600	Weak transcription	K562	blood
6	chr4:103488200-103520000	Weak transcription	Fetal Kidney	kidney
7	chr4:103490800-103519200	Weak transcription	Stomach Mucosa	stomach
8	chr4:103495800-103511800	Strong transcription	Primary B cells from cord blood	blood
9	chr4:103495800-103516400	Weak transcription	NHLF	lung
10	chr4:103496200-103513200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr4:103497000-103516600	Weak transcription	Brain Substantia Nigra	brain
12	chr4:103497400-103513000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr4:103497600-103533400	Strong transcription	Primary B cells from peripheral blood	blood
14	chr4:103498000-103511600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:103498000-103511600	Strong transcription	Dnd41	blood
16	chr4:103498000-103513000	Strong transcription	Liver	Liver
17	chr4:103498000-103513200	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr4:103498200-103511600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:103498200-103513400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:103498200-103513600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:103498800-103520600	Weak transcription	Fetal Brain Female	brain
22	chr4:103500200-103511400	Weak transcription	Ovary	ovary
23	chr4:103500200-103515600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:103500200-103527600	Weak transcription	Pancreas	Pancrea
25	chr4:103500400-103512000	Weak transcription	A549	lung
26	chr4:103500400-103516400	Weak transcription	Gastric	stomach
27	chr4:103500400-103522600	Weak transcription	Psoas Muscle	Psoas
28	chr4:103500400-103528200	Weak transcription	Right Ventricle	heart
29	chr4:103500800-103517400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:103501800-103512200	Strong transcription	Fetal Intestine Large	intestine
31	chr4:103502600-103532800	Weak transcription	Brain Germinal Matrix	brain
32	chr4:103502800-103517400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr4:103503200-103516800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr4:103503400-103511600	Weak transcription	Fetal Heart	heart
35	chr4:103504400-103514000	Weak transcription	HepG2	liver
36	chr4:103504800-103512200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:103504800-103516400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr4:103505000-103517400	Strong transcription	HSMMtube	muscle
39	chr4:103505600-103516600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr4:103506000-103512800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr4:103506400-103512000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:103506400-103514600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr4:103506400-103514800	Weak transcription	HUVEC	blood vessel
44	chr4:103506800-103512400	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr4:103507000-103512400	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:103507400-103515800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr4:103507600-103511800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr4:103508000-103518600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr4:103508200-103517400	Weak transcription	Lung	lung
50	chr4:103508200-103518600	Weak transcription	Esophagus	oesophagus

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