Variant report

Variant	rs10489550
Chromosome Location	chr1:70081878-70081879
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:69820993..69822577-chr1:70080640..70082316,2	K562	blood:
2	chr1:70080360..70082060-chr1:70082197..70083768,2	K562	blood:
3	chr1:70017831..70020067-chr1:70079931..70082875,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10889840	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10889842	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11209495	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11209496	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11209505	1.00[CEU][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12038666	0.86[EUR][1000 genomes]
rs12084695	0.92[CEU][hapmap];0.88[GIH][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12122895	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12136900	1.00[CEU][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap]
rs12564056	0.92[CEU][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12750288	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17131004	1.00[CEU][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap]
rs2066296	1.00[CEU][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs227103	0.83[GIH][hapmap]
rs2901340	1.00[CEU][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6699502	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs699223	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7513822	1.00[YRI][hapmap]
rs800923	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs810347	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs810348	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384194	chr1:69885024-70275430	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830126	chr1:70014879-70167979	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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