Variant report

Variant	rs10489636
Chromosome Location	chr1:160651750-160651751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:160651216..160652600-chr1:160800013..160800990,10	K562	blood:
2	chr1:160646207..160647785-chr1:160649576..160651759,3	K562	blood:
3	chr1:160651375..160651982-chr1:160696381..160697125,3	K562	blood:
4	chr1:160648911..160653245-chr1:160654061..160656331,4	K562	blood:
5	chr1:160651384..160651939-chr1:160921268..160921800,2	K562	blood:
6	chr1:160651102..160651863-chr4:83388790..83389649,2	MCF-7	breast:
7	chr1:160651015..160651888-chr1:160749249..160750123,3	K562	blood:
8	chr1:160650970..160651890-chr1:160662246..160662875,3	MCF-7	breast:

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10489637	0.86[CHD][hapmap]
rs10489638	1.00[YRI][hapmap]
rs3796502	0.86[CHD][hapmap]
rs507260	0.90[CHB][hapmap]
rs530133	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160643400-160655200	Weak transcription	Colonic Mucosa	Colon
2	chr1:160644600-160655800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:160645800-160653600	Weak transcription	Fetal Intestine Small	intestine
4	chr1:160646000-160652400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:160646000-160653000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:160646000-160653000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:160646800-160652400	Strong transcription	Spleen	Spleen
8	chr1:160648000-160652600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:160650400-160655600	Genic enhancers	Fetal Thymus	thymus
10	chr1:160650600-160656400	Genic enhancers	Primary T cells fromperipheralblood	blood
11	chr1:160650800-160651800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:160650800-160652600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
13	chr1:160650800-160652800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:160650800-160653000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr1:160650800-160655200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:160651000-160651800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr1:160651000-160651800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr1:160651000-160651800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:160651000-160651800	Genic enhancers	Thymus	Thymus
20	chr1:160651000-160652200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr1:160651000-160652600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
22	chr1:160651000-160653000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr1:160651000-160653200	Weak transcription	Lung	lung
24	chr1:160651000-160656400	Genic enhancers	Primary B cells from peripheral blood	blood
25	chr1:160651000-160656400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
26	chr1:160651200-160651800	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr1:160651200-160652600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr1:160651200-160652800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr1:160651200-160653000	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr1:160651200-160653200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr1:160651200-160655000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr1:160651200-160655800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr1:160651400-160652600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr1:160651400-160652600	Genic enhancers	Monocytes-CD14+_RO01746	blood
35	chr1:160651400-160656000	Genic enhancers	Primary B cells from cord blood	blood
36	chr1:160651600-160651800	Flanking Active TSS	Duodenum Mucosa	Duodenum
37	chr1:160651600-160651800	Enhancers	Esophagus	oesophagus
38	chr1:160651600-160651800	Enhancers	K562	blood
39	chr1:160651600-160653800	Genic enhancers	GM12878-XiMat	blood
40	chr1:160651600-160655400	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:160651600-160655400	Genic enhancers	Dnd41	blood
42	chr1:160651600-160656400	Genic enhancers	Primary T cells from cord blood	blood
43	chr1:160651600-160656600	Genic enhancers	Primary monocytes fromperipheralblood	blood

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