Variant report

Variant	rs10489878
Chromosome Location	chr1:192570641-192570642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4325109	1.00[ASN][1000 genomes]
rs4562598	1.00[ASN][1000 genomes]
rs4633271	1.00[AFR][1000 genomes]
rs61741287	1.00[AFR][1000 genomes]
rs73060140	1.00[ASN][1000 genomes]
rs7413087	0.86[ASN][1000 genomes]
rs7535318	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv467005	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548659	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192569800-192571200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:192570000-192570800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr1:192570000-192571000	Enhancers	GM12878-XiMat	blood
4	chr1:192570000-192571200	Enhancers	HSMMtube	muscle
5	chr1:192570200-192571200	Enhancers	Dnd41	blood
6	chr1:192570400-192571000	Enhancers	Aorta	Aorta
7	chr1:192570400-192571200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:192570400-192571200	Enhancers	NH-A	brain
9	chr1:192570400-192571400	Enhancers	HSMM	muscle
10	chr1:192570400-192573800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:192570600-192571000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:192570600-192571000	Enhancers	HUVEC	blood vessel
13	chr1:192570600-192571400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr1:192570600-192571400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr1:192570600-192574600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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