Variant report

Variant	rs10490661
Chromosome Location	chr2:36967768-36967769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10490662	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[MEX][hapmap];0.91[AMR][1000 genomes]
rs17019537	1.00[CEU][hapmap]
rs17019662	0.80[MEX][hapmap]
rs17019667	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17019854	1.00[TSI][hapmap]
rs58723182	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6710234	0.84[CHB][hapmap]
rs72855815	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36942600-36968800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:36958000-36968200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:36958000-36970800	Weak transcription	Ovary	ovary
4	chr2:36960200-36980400	Weak transcription	NHDF-Ad	bronchial
5	chr2:36961000-36971000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:36961800-36969600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:36965200-36979400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:36966800-36968000	Enhancers	Fetal Lung	lung
9	chr2:36966800-36969600	Enhancers	Fetal Stomach	stomach
10	chr2:36967000-36968800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr2:36967000-36969000	Enhancers	Primary hematopoietic stem cells	blood
12	chr2:36967000-36969000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:36967200-36967800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:36967200-36968400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr2:36967200-36968600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr2:36967400-36968400	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:36967400-36968800	Enhancers	Primary T cells from cord blood	blood
18	chr2:36967600-36968400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr2:36967600-36968600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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