Variant report
| Variant | rs10491805 |
|---|---|
| Chromosome Location | chr9:95347484-95347485 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
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(count:2 , 50 per page) page:
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| No data |
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rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10992339 | 1.00[TSI][hapmap] |
| rs10992386 | 0.86[AMR][1000 genomes] |
| rs10992389 | 0.84[AMR][1000 genomes] |
| rs12236118 | 0.81[AMR][1000 genomes] |
| rs12238865 | 0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes] |
| rs16908471 | 0.85[AMR][1000 genomes] |
| rs16908498 | 0.87[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes] |
| rs2101775 | 0.83[AMR][1000 genomes] |
| rs715846 | 1.00[TSI][hapmap] |
| rs754601 | 0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893573 | chr9:94974188-95355719 | Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv1047337 | chr9:95105638-95347484 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv1052846 | chr9:95291909-95366109 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
