Variant report

Variant	rs10492351
Chromosome Location	chr12:106508815-106508816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106506182..106509109-chr12:106524613..106526452,2	MCF-7	breast:
2	chr12:106508004..106509932-chr12:106531212..106534015,2	MCF-7	breast:
3	chr12:106508033..106510439-chr12:106525207..106527299,2	MCF-7	breast:
4	chr12:106506758..106508828-chr12:106518372..106520246,3	MCF-7	breast:
5	chr12:106508433..106510646-chr12:106520265..106522295,2	MCF-7	breast:
6	chr12:106508626..106511209-chr12:106513062..106515642,2	K562	blood:

Variant related genes	Relation type
ENSG00000074590	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11112866	0.87[ASN][1000 genomes]
rs12318540	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1896364	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3782692	0.93[ASN][1000 genomes]
rs55748925	0.87[ASN][1000 genomes]
rs55941206	0.95[EUR][1000 genomes]
rs56027035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7138598	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7485023	0.81[ASN][1000 genomes]
rs892270	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106493400-106512400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:106499600-106511400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:106500000-106510000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr12:106500200-106510200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr12:106500200-106514000	Enhancers	Liver	Liver
6	chr12:106500800-106510200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:106500800-106521800	Enhancers	Brain Angular Gyrus	brain
8	chr12:106501200-106516800	Enhancers	Right Ventricle	heart
9	chr12:106501400-106510400	Enhancers	Fetal Brain Female	brain
10	chr12:106502400-106510000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr12:106502600-106509400	Weak transcription	Gastric	stomach
12	chr12:106503600-106510800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:106504200-106524600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr12:106504400-106509000	Enhancers	HMEC	breast
15	chr12:106504600-106509600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:106504800-106529000	Enhancers	Left Ventricle	heart
17	chr12:106504800-106532400	Weak transcription	Spleen	Spleen
18	chr12:106505000-106509600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:106505400-106509400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr12:106505800-106509000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:106505800-106509400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr12:106505800-106509600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr12:106505800-106509600	Enhancers	Placenta	Placenta
24	chr12:106505800-106509800	Enhancers	Brain Anterior Caudate	brain
25	chr12:106505800-106509800	Enhancers	Fetal Muscle Leg	muscle
26	chr12:106505800-106510000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr12:106505800-106510200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr12:106505800-106510400	Enhancers	Fetal Brain Male	brain
29	chr12:106506000-106509000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr12:106506000-106509000	Flanking Active TSS	A549	lung
31	chr12:106506000-106509800	Enhancers	Fetal Stomach	stomach
32	chr12:106506000-106510800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr12:106506000-106523800	Enhancers	Psoas Muscle	Psoas
34	chr12:106506200-106513800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr12:106506400-106509400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr12:106506400-106515400	Enhancers	Brain Cingulate Gyrus	brain
37	chr12:106506600-106509400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr12:106506600-106509800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr12:106506800-106509000	Enhancers	HUVEC	blood vessel
40	chr12:106507200-106509000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr12:106507200-106509400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr12:106507200-106512000	Weak transcription	Esophagus	oesophagus
43	chr12:106507200-106520600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr12:106507400-106509000	Enhancers	Muscle Satellite Cultured Cells	--
45	chr12:106507400-106509200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr12:106507400-106509200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr12:106507400-106510400	Weak transcription	HepG2	liver
48	chr12:106507400-106510800	Enhancers	Brain Hippocampus Middle	brain
49	chr12:106507400-106523600	Enhancers	Adipose Nuclei	Adipose
50	chr12:106507600-106509200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links