Variant report

Variant	rs10492518
Chromosome Location	chr13:51765037-51765038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11842791	0.94[ASN][1000 genomes]
rs12585772	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1340547	0.84[ASN][1000 genomes]
rs17252048	0.92[ASN][1000 genomes]
rs17837199	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2408298	0.91[ASN][1000 genomes]
rs61958522	0.94[ASN][1000 genomes]
rs7987638	0.93[ASN][1000 genomes]
rs9316529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9563034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9568543	0.91[ASN][1000 genomes]
rs9568546	0.94[ASN][1000 genomes]
rs9568554	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523778	chr13:51755107-51768501	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51750200-51767000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:51754000-51766000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:51754600-51770000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:51755000-51765600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:51759000-51767800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:51761800-51766200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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