Variant report

Variant	rs10492520
Chromosome Location	chr13:51840570-51840571
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12584566	1.00[MEX][hapmap]
rs12585685	0.97[ASN][1000 genomes]
rs2148527	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs2408301	0.82[MEX][hapmap]
rs73490200	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990291	0.97[ASN][1000 genomes]
rs9568558	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs9634837	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs964826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51821600-51845000	Weak transcription	Fetal Brain Male	brain
2	chr13:51824200-51844000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:51825400-51840600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr13:51826400-51854600	Weak transcription	Aorta	Aorta
5	chr13:51832800-51843200	Weak transcription	Fetal Lung	lung
6	chr13:51833600-51860400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:51834000-51845200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:51834000-51850800	Weak transcription	Pancreas	Pancrea
9	chr13:51834200-51856400	Weak transcription	Gastric	stomach
10	chr13:51836000-51845600	Weak transcription	Fetal Brain Female	brain
11	chr13:51836200-51841800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr13:51836200-51843000	Weak transcription	Ovary	ovary
13	chr13:51836200-51850000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr13:51836400-51840600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr13:51836600-51844600	Weak transcription	Brain Germinal Matrix	brain
16	chr13:51837200-51840600	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr13:51837200-51843000	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr13:51837200-51844600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr13:51837200-51850400	Weak transcription	Adipose Nuclei	Adipose
20	chr13:51837400-51840600	Weak transcription	Fetal Muscle Leg	muscle
21	chr13:51837400-51840600	Weak transcription	Right Atrium	heart
22	chr13:51837400-51840800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr13:51837400-51841200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr13:51837400-51845200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr13:51837600-51840600	Weak transcription	Brain Angular Gyrus	brain
26	chr13:51837600-51840600	Weak transcription	Left Ventricle	heart
27	chr13:51837600-51841200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr13:51837600-51842000	Weak transcription	Right Ventricle	heart
29	chr13:51837600-51852600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr13:51837800-51842000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:51837800-51842200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr13:51837800-51842600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr13:51837800-51860400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr13:51838800-51843200	Enhancers	Fetal Heart	heart
35	chr13:51839400-51842200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr13:51839400-51845000	Enhancers	Brain Cingulate Gyrus	brain
37	chr13:51839600-51840600	Weak transcription	Spleen	Spleen
38	chr13:51839600-51842800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr13:51839800-51840600	Weak transcription	Brain Hippocampus Middle	brain
40	chr13:51839800-51846800	Enhancers	Brain Substantia Nigra	brain
41	chr13:51839800-51850200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr13:51839800-51854600	Weak transcription	Lung	lung
43	chr13:51840000-51842000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr13:51840000-51842600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr13:51840000-51849600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr13:51840000-51852200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr13:51840000-51852600	Weak transcription	Fetal Stomach	stomach
48	chr13:51840200-51843000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr13:51840400-51841000	Enhancers	Colon Smooth Muscle	Colon
50	chr13:51840400-51841000	Enhancers	Skeletal Muscle Female	skeletal muscle

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