Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12323067	0.90[GIH][hapmap]
rs12584548	0.82[JPT][hapmap]
rs12866362	0.91[GIH][hapmap]
rs12873862	0.90[GIH][hapmap]
rs17253857	0.82[JPT][hapmap];0.89[MEX][hapmap]
rs1924115	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2274020	0.94[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2274021	0.94[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs35071333	1.00[ASN][1000 genomes]
rs35333555	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7333509	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8002396	0.82[JPT][hapmap];0.89[MEX][hapmap]
rs9516402	0.82[JPT][hapmap];0.89[MEX][hapmap]
rs9516404	0.82[JPT][hapmap];0.89[MEX][hapmap]
rs9524463	0.85[JPT][hapmap]
rs9524471	1.00[ASN][1000 genomes]
rs9589972	0.82[JPT][hapmap]
rs9589974	0.82[JPT][hapmap]
rs9589984	0.81[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs9589986	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv456077	chr13:94993032-95051560	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv562755	chr13:94993032-95051560	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95030000-95050000	Weak transcription	Ovary	ovary
2	chr13:95033800-95055400	Weak transcription	HSMMtube	muscle
3	chr13:95034800-95037400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:95034800-95037800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:95034800-95050000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr13:95034800-95052800	Weak transcription	Fetal Stomach	stomach
7	chr13:95035600-95054800	Weak transcription	Fetal Intestine Small	intestine
8	chr13:95036000-95037200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:95036200-95037200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr13:95036200-95037200	Enhancers	Brain Hippocampus Middle	brain
11	chr13:95036600-95042000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:95036800-95037200	Enhancers	Brain Cingulate Gyrus	brain
13	chr13:95037000-95042400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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