Variant report

Variant	rs10492766
Chromosome Location	chr16:11961672-11961673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:11944120..11947229-chr16:11960940..11964317,3	MCF-7	breast:
2	chr16:11959980..11962642-chr16:11968005..11970163,2	K562	blood:
3	chr16:11943823..11946551-chr16:11960256..11963232,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263307	Chromatin interaction
ENSG00000171490	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16958698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2022093	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57309246	1.00[EUR][1000 genomes]
rs59148688	1.00[EUR][1000 genomes]
rs59403008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60578760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924385	1.00[EUR][1000 genomes]
rs61602378	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73509783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73511609	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73511658	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73513607	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043909	chr16:11839910-12007435	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1042660	chr16:11846873-12110435	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv571458	chr16:11925008-12087282	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:11946200-11975600	Weak transcription	Aorta	Aorta
2	chr16:11946400-11969400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:11946400-11969400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr16:11946400-11969400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:11946400-11975600	Weak transcription	Esophagus	oesophagus
6	chr16:11946600-11961800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr16:11946600-11961800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr16:11946600-11961800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr16:11946600-11962000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr16:11946600-11962200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr16:11946600-11962400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr16:11946600-11962400	Weak transcription	HSMMtube	muscle
13	chr16:11946600-11966800	Weak transcription	Lung	lung
14	chr16:11946600-11969000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr16:11946600-11970400	Weak transcription	Right Atrium	heart
16	chr16:11946800-11962000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr16:11946800-11962200	Weak transcription	Thymus	Thymus
18	chr16:11947000-11961800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr16:11947000-11962000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr16:11947000-11962000	Weak transcription	Fetal Muscle Leg	muscle
21	chr16:11947000-11962400	Weak transcription	Fetal Intestine Large	intestine
22	chr16:11947000-11969400	Weak transcription	Right Ventricle	heart
23	chr16:11947200-11966800	Weak transcription	Small Intestine	intestine
24	chr16:11947200-11967200	Weak transcription	Fetal Intestine Small	intestine
25	chr16:11947200-11967200	Weak transcription	Fetal Stomach	stomach
26	chr16:11947200-11968800	Weak transcription	Ovary	ovary
27	chr16:11948000-11962600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr16:11948000-11963400	Weak transcription	Spleen	Spleen
29	chr16:11948200-11962200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr16:11948200-11962400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr16:11948400-11962400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr16:11948400-11962400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr16:11948400-11963200	Weak transcription	Fetal Lung	lung
34	chr16:11948400-11969000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr16:11948600-11962000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr16:11948600-11962200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr16:11948600-11962200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr16:11948600-11962400	Weak transcription	Brain Germinal Matrix	brain
39	chr16:11948600-11963200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr16:11948600-11969000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr16:11948800-11961800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr16:11948800-11962000	Weak transcription	Fetal Brain Male	brain
43	chr16:11948800-11962200	Weak transcription	Adipose Nuclei	Adipose
44	chr16:11948800-11962400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr16:11948800-11962400	Weak transcription	Dnd41	blood
46	chr16:11948800-11963400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr16:11948800-11965000	Weak transcription	Brain Substantia Nigra	brain
48	chr16:11948800-11965600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr16:11948800-11966200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr16:11948800-11966600	Weak transcription	Colon Smooth Muscle	Colon

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