Variant report

Variant	rs10492861
Chromosome Location	chr16:82866767-82866768
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10492862	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12599050	0.80[EUR][1000 genomes]
rs1903623	1.00[JPT][hapmap]
rs1982608	1.00[JPT][hapmap]
rs2061628	1.00[JPT][hapmap]
rs2549158	1.00[JPT][hapmap]
rs2549159	1.00[JPT][hapmap]
rs4299147	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs56302847	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59329801	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59926756	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62035177	0.80[EUR][1000 genomes]
rs6565071	1.00[JPT][hapmap]
rs7196397	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7202042	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7206608	1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8044562	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv573379	chr16:82713551-82887631	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv907027	chr16:82830121-82871350	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2830385	chr16:82841335-82950413	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82833000-82873600	Weak transcription	HMEC	breast
2	chr16:82848200-82898200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr16:82851000-82869200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr16:82856800-82876200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr16:82857000-82868800	Weak transcription	NHEK	skin
6	chr16:82858400-82869000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:82859200-82867000	Weak transcription	Right Ventricle	heart
8	chr16:82862400-82867200	Weak transcription	Psoas Muscle	Psoas
9	chr16:82863200-82892800	Weak transcription	HSMMtube	muscle
10	chr16:82864000-82869800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr16:82864800-82868200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr16:82865000-82870200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr16:82865200-82868200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr16:82865400-82866800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr16:82865400-82867200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr16:82865400-82867400	Enhancers	Fetal Brain Male	brain
17	chr16:82865400-82869200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr16:82865600-82866800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr16:82865600-82867000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr16:82866000-82866800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr16:82866000-82867600	Enhancers	NHDF-Ad	bronchial
22	chr16:82866000-82868000	Enhancers	Osteobl	bone
23	chr16:82866000-82868400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr16:82866000-82868400	Enhancers	HSMM	muscle
25	chr16:82866200-82867200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr16:82866200-82867800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr16:82866200-82869400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr16:82866200-82869600	Enhancers	NH-A	brain
29	chr16:82866400-82866800	Enhancers	Aorta	Aorta
30	chr16:82866400-82869400	Enhancers	H1 Cell Line	embryonic stem cell
31	chr16:82866600-82867400	Enhancers	Fetal Muscle Leg	muscle
32	chr16:82866600-82869600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr16:82866600-82869600	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr16:82866600-82869800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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