Variant report
| Variant | rs10493460 |
|---|---|
| Chromosome Location | chr1:70342282-70342283 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | E2F4 | chr1:70342221-70342360 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RN7SL538P | TF binding region |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10493458 | 1.00[YRI][hapmap] |
| rs12032951 | 0.88[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap] |
| rs1327880 | 1.00[YRI][hapmap] |
| rs17131035 | 0.90[AFR][1000 genomes] |
| rs17131042 | 0.90[AFR][1000 genomes] |
| rs17131046 | 0.95[AFR][1000 genomes] |
| rs17131051 | 1.00[AFR][1000 genomes] |
| rs17131059 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1913265 | 1.00[YRI][hapmap] |
| rs1913267 | 1.00[YRI][hapmap] |
| rs1938583 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428466 | chr1:70306638-70455357 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
