Variant report
| Variant | rs10493570 |
|---|---|
| Chromosome Location | chr1:75780028-75780029 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10493561 | 1.00[CHB][hapmap] |
| rs12132601 | 1.00[CHB][hapmap] |
| rs12133614 | 1.00[CHB][hapmap] |
| rs12138223 | 1.00[CHB][hapmap] |
| rs12142460 | 1.00[CHB][hapmap] |
| rs12732329 | 1.00[CHB][hapmap] |
| rs12751207 | 1.00[CHB][hapmap] |
| rs1319656 | 1.00[CHB][hapmap] |
| rs1405312 | 1.00[CHB][hapmap] |
| rs1526511 | 1.00[CHB][hapmap] |
| rs1852348 | 1.00[CHB][hapmap] |
| rs1852349 | 1.00[CHB][hapmap] |
| rs4949821 | 1.00[CHB][hapmap] |
| rs4949838 | 0.82[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56212906 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs607167 | 1.00[CHB][hapmap] |
| rs610159 | 1.00[CHB][hapmap] |
| rs6695423 | 1.00[CHB][hapmap] |
| rs677470 | 1.00[CHB][hapmap] |
| rs679258 | 1.00[CHB][hapmap] |
| rs684117 | 1.00[CHB][hapmap] |
| rs7524020 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3368999 | chr1:75524762-75933220 | Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1013952 | chr1:75716654-75936048 | Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv535004 | chr1:75716654-75936048 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10493570 | RABGGTB | cis | cerebellum | SCAN |
| rs10493570 | ZZZ3 | cis | cerebellum | SCAN |
| rs10493570 | FUBP1 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:75779400-75780400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
