Variant report

Variant	rs10493872
Chromosome Location	chr1:94890418-94890419
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94882805..94885755-chr1:94886317..94890931,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117528	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1542728	0.88[GIH][hapmap]
rs72729511	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94885200-94891000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:94885200-94907200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr1:94885200-94915000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:94885600-94891200	Weak transcription	Adipose Nuclei	Adipose
5	chr1:94885600-94891800	Weak transcription	Fetal Stomach	stomach
6	chr1:94885800-94891000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:94885800-94891000	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:94885800-94891400	Weak transcription	Fetal Lung	lung
9	chr1:94885800-94894000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:94885800-94894000	Weak transcription	Colonic Mucosa	Colon
11	chr1:94886000-94891000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:94886000-94891400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr1:94886000-94891400	Weak transcription	Fetal Kidney	kidney
14	chr1:94886000-94891600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:94886200-94891400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:94886200-94891400	Weak transcription	Brain Hippocampus Middle	brain
17	chr1:94886400-94891000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:94886800-94891000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr1:94887400-94894800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr1:94887800-94891000	Weak transcription	Fetal Intestine Small	intestine
21	chr1:94888000-94891200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:94888000-94892600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:94888000-94894200	Weak transcription	Right Ventricle	heart
24	chr1:94888000-94895000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:94888000-94895400	Weak transcription	Lung	lung
26	chr1:94888000-94902200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:94888200-94891000	Enhancers	Liver	Liver
28	chr1:94888200-94891200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr1:94888200-94894000	Weak transcription	Gastric	stomach
30	chr1:94888200-94905400	Weak transcription	Right Atrium	heart
31	chr1:94888400-94891400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:94888400-94891400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr1:94888400-94914600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:94888600-94890800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:94888600-94891000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr1:94888600-94891400	Weak transcription	Hela-S3	cervix
37	chr1:94888600-94891400	Weak transcription	NHDF-Ad	bronchial
38	chr1:94888600-94893200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr1:94888800-94891400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr1:94888800-94891400	Weak transcription	Dnd41	blood
41	chr1:94888800-94891400	Weak transcription	Osteobl	bone
42	chr1:94889000-94891200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr1:94889000-94891400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr1:94889000-94899200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:94889200-94891000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr1:94889200-94891000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr1:94889200-94891000	Weak transcription	HMEC	breast
48	chr1:94889200-94891200	Weak transcription	Fetal Intestine Large	intestine
49	chr1:94889200-94891400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr1:94889200-94914200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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