Variant report

Variant	rs10493961
Chromosome Location	chr1:102149814-102149815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11164272	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11164274	0.87[AMR][1000 genomes]
rs12076020	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12096354	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55785127	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870459	chr1:102112168-102166616	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102148200-102153000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:102149000-102150800	Enhancers	Fetal Heart	heart
3	chr1:102149000-102151200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:102149800-102150000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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