Variant report

Variant	rs10495242
Chromosome Location	chr1:225760018-225760019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225759930..225762084-chr1:225837914..225840805,3	MCF-7	breast:
2	chr1:225759882..225763061-chr1:225838527..225842232,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154380	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12034829	0.87[YRI][hapmap]
rs1771316	0.93[YRI][hapmap]
rs1891000	0.93[YRI][hapmap]
rs2840961	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832714	chr1:225592333-225805396	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv832725	chr1:225726998-225910121	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv511737	chr1:225759933-225763071	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225730600-225765800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:225730600-225776200	Weak transcription	Pancreas	Pancrea
3	chr1:225732400-225763000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr1:225734600-225763600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:225744800-225760200	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:225744800-225761400	Weak transcription	Brain Angular Gyrus	brain
7	chr1:225744800-225768200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:225744800-225768600	Weak transcription	Fetal Brain Male	brain
9	chr1:225745000-225760800	Weak transcription	Fetal Kidney	kidney
10	chr1:225745000-225770000	Weak transcription	HUVEC	blood vessel
11	chr1:225745000-225772800	Weak transcription	Fetal Brain Female	brain
12	chr1:225747800-225765000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:225748800-225765800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:225748800-225799400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:225749200-225783800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:225750800-225761200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:225754000-225764600	Weak transcription	Fetal Stomach	stomach
18	chr1:225754200-225761000	Weak transcription	Aorta	Aorta
19	chr1:225754200-225764400	Weak transcription	Right Atrium	heart
20	chr1:225754200-225764600	Weak transcription	Ovary	ovary
21	chr1:225754400-225764400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr1:225754400-225769400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr1:225754600-225761200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:225754600-225764400	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:225754600-225766000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr1:225754800-225760200	Weak transcription	NH-A	brain
27	chr1:225755200-225760200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:225755200-225760800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr1:225755200-225763800	Weak transcription	Left Ventricle	heart
30	chr1:225755200-225766000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:225755200-225772200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:225755400-225765000	Weak transcription	HSMM	muscle
33	chr1:225756600-225765000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr1:225756600-225767600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr1:225756800-225760200	Weak transcription	A549	lung
36	chr1:225756800-225764400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr1:225756800-225765400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr1:225757000-225760400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:225757000-225761200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr1:225757000-225764200	Weak transcription	NHDF-Ad	bronchial
41	chr1:225757000-225764400	Weak transcription	Fetal Heart	heart
42	chr1:225757000-225765000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:225757000-225765000	Weak transcription	NHLF	lung
44	chr1:225757600-225761200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr1:225757600-225761200	Weak transcription	Fetal Lung	lung
46	chr1:225758200-225764600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr1:225758200-225765800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr1:225758600-225760400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:225758600-225765000	Weak transcription	Brain Germinal Matrix	brain
50	chr1:225759400-225761200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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