Variant report

Variant	rs10495567
Chromosome Location	chr2:9833804-9833805
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:9821821..9823452-chr2:9832501..9834077,2	K562	blood:
2	chr2:9765382..9767030-chr2:9832292..9834143,2	K562	blood:
3	chr2:9831651..9835437-chr2:9836987..9840306,5	K562	blood:
4	chr2:9695765..9698212-chr2:9833271..9835203,2	K562	blood:
5	chr2:9821436..9823321-chr2:9832577..9834221,2	K562	blood:
6	chr2:9765530..9767539-chr2:9832292..9835222,2	K562	blood:
7	chr2:9823750..9829762-chr2:9830969..9835098,7	K562	blood:

Variant related genes	Relation type
ENSG00000151694	Chromatin interaction
ENSG00000271855	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11676974	1.00[CHB][hapmap]
rs13405388	1.00[ASN][1000 genomes]
rs1829980	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2049431	1.00[CHB][hapmap]
rs4668635	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669422	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669423	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669425	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669465	1.00[CHB][hapmap]
rs4669466	1.00[CHB][hapmap]
rs7569448	0.83[EUR][1000 genomes]
rs908292	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580915	chr2:9308148-9844178	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv469405	chr2:9814374-9964947	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv580930	chr2:9814374-9964947	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9830400-9834200	Enhancers	Fetal Muscle Leg	muscle
2	chr2:9831800-9835600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:9832000-9834200	Enhancers	Fetal Muscle Trunk	muscle
4	chr2:9832200-9834000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:9832200-9834200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr2:9832200-9834200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr2:9832400-9834000	Enhancers	Fetal Heart	heart
8	chr2:9832400-9834000	Enhancers	Rectal Smooth Muscle	rectum
9	chr2:9832400-9834000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr2:9832400-9834200	Enhancers	Left Ventricle	heart
11	chr2:9832400-9834200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr2:9832600-9834200	Enhancers	Right Ventricle	heart
13	chr2:9832800-9834000	Enhancers	Colon Smooth Muscle	Colon
14	chr2:9832800-9835000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:9833000-9834000	Enhancers	NHLF	lung
16	chr2:9833000-9834800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:9833000-9835000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr2:9833000-9838200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr2:9833200-9834000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr2:9833200-9834000	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr2:9833200-9834200	Enhancers	NHDF-Ad	bronchial
22	chr2:9833200-9835000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr2:9833200-9835000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr2:9833200-9835000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr2:9833200-9835800	Weak transcription	Fetal Intestine Small	intestine
26	chr2:9833200-9836000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr2:9833200-9838000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr2:9833400-9834000	Enhancers	Adipose Nuclei	Adipose
29	chr2:9833400-9834000	Enhancers	HSMMtube	muscle
30	chr2:9833400-9834200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:9833400-9834200	Enhancers	Psoas Muscle	Psoas
32	chr2:9833400-9836000	Weak transcription	Fetal Intestine Large	intestine
33	chr2:9833400-9836200	Weak transcription	A549	lung
34	chr2:9833400-9838000	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr2:9833400-9839400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr2:9833600-9834200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr2:9833600-9834200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr2:9833600-9834800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr2:9833600-9836600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr2:9833600-9838000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr2:9833600-9842400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr2:9833600-9842600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr2:9833800-9834000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr2:9833800-9834000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr2:9833800-9834000	Enhancers	Spleen	Spleen
46	chr2:9833800-9834000	Bivalent Enhancer	HepG2	liver
47	chr2:9833800-9834000	Enhancers	Osteobl	bone
48	chr2:9833800-9834200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:9833800-9834200	Enhancers	Stomach Smooth Muscle	stomach
50	chr2:9833800-9834200	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links