Variant report

Variant	rs10496098
Chromosome Location	chr2:62757459-62757460
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11900958	0.84[EUR][1000 genomes]
rs1527962	0.83[CEU][hapmap]
rs17516315	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17516336	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17516489	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17575420	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17575679	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2901483	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56185926	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56390862	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62178040	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62178041	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62178044	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62178045	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62178046	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62178047	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535766	chr2:62177655-62929746	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916190	chr2:62233785-63006200	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv932487	chr2:62258290-63006200	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	esv2760551	chr2:62741167-62760232	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv834226	chr2:62745027-62894013	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	esv3336776	chr2:62747914-62813461	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv527200	chr2:62751619-62758044	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:62749200-62760400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:62753600-62757600	Enhancers	HepG2	liver
3	chr2:62754200-62758400	Weak transcription	Pancreas	Pancrea
4	chr2:62754200-62766800	Weak transcription	Ovary	ovary
5	chr2:62756000-62757600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:62756200-62757600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:62756200-62757600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr2:62757000-62757600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:62757400-62757600	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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