Variant report

Variant	rs10496485
Chromosome Location	chr2:115882780-115882781
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13429396	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1396919	0.90[ASN][1000 genomes]
rs17044073	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2420886	0.96[ASN][1000 genomes]
rs58951820	0.96[ASN][1000 genomes]
rs60600614	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62164532	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115882000-115882800	Enhancers	Fetal Intestine Large	intestine
2	chr2:115882000-115887200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:115882200-115886600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:115882200-115886600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:115882200-115892400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:115882400-115889800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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