Variant report

Variant	rs10497055
Chromosome Location	chr2:151197324-151197325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11887785	1.00[ASN][1000 genomes]
rs11903055	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11903519	1.00[ASN][1000 genomes]
rs16828078	1.00[EUR][1000 genomes]
rs16828091	1.00[ASN][1000 genomes]
rs16828095	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16828099	1.00[ASN][1000 genomes]
rs16828101	1.00[ASN][1000 genomes]
rs16828160	1.00[ASN][1000 genomes]
rs2119752	1.00[ASN][1000 genomes]
rs55782703	1.00[EUR][1000 genomes]
rs66695478	0.99[AFR][1000 genomes]
rs6717130	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72989965	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72989969	1.00[ASN][1000 genomes]
rs72989981	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72989983	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72993823	1.00[ASN][1000 genomes]
rs7586993	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151188400-151198000	Weak transcription	Aorta	Aorta
2	chr2:151195600-151197400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:151195600-151197800	Enhancers	Brain Germinal Matrix	brain
4	chr2:151195600-151199600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:151195800-151197600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:151196800-151197400	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr2:151197000-151197400	Enhancers	Fetal Brain Female	brain
8	chr2:151197200-151197800	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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