Variant report

Variant	rs10497496
Chromosome Location	chr2:178504484-178504485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16865293	1.00[EUR][1000 genomes]
rs16865316	1.00[EUR][1000 genomes]
rs16865334	1.00[EUR][1000 genomes]
rs16865384	1.00[EUR][1000 genomes]
rs16865494	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16865503	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28576781	1.00[EUR][1000 genomes]
rs6708473	1.00[EUR][1000 genomes]
rs73031249	1.00[EUR][1000 genomes]
rs73040804	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73040805	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583688	chr2:178427640-178540293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv583689	chr2:178468008-178509820	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178499200-178505400	Weak transcription	Fetal Lung	lung
2	chr2:178499800-178505400	Weak transcription	Fetal Kidney	kidney
3	chr2:178500200-178505600	Weak transcription	Left Ventricle	heart
4	chr2:178503400-178504600	Enhancers	Fetal Muscle Leg	muscle
5	chr2:178503800-178504600	Enhancers	Spleen	Spleen
6	chr2:178503800-178505000	Enhancers	Dnd41	blood
7	chr2:178504000-178504600	Enhancers	Right Atrium	heart
8	chr2:178504000-178504800	Flanking Active TSS	K562	blood
9	chr2:178504200-178505200	Weak transcription	Fetal Brain Male	brain
10	chr2:178504400-178506600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr2:178504400-178507200	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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