Variant report

Variant	rs10498726
Chromosome Location	chr6:25481991-25481992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12173289	1.00[YRI][hapmap]
rs12525342	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16890640	0.90[CEU][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs169978	1.00[YRI][hapmap]
rs215013	1.00[YRI][hapmap]
rs2690054	1.00[YRI][hapmap]
rs35330592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41271813	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41368745	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.90[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4712942	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4712943	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73734011	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73734013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7454031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv432856	chr6:25468825-25494666	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25446800-25493600	Weak transcription	Left Ventricle	heart
2	chr6:25446800-25504400	Weak transcription	Primary B cells from cord blood	blood
3	chr6:25449400-25515800	Weak transcription	Lung	lung
4	chr6:25450400-25488400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:25456400-25499200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:25456400-25515800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:25456400-25537000	Weak transcription	Esophagus	oesophagus
8	chr6:25463000-25490000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:25463200-25532200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:25463800-25487400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:25464000-25498800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:25464200-25518400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:25464800-25490000	Weak transcription	Hela-S3	cervix
14	chr6:25465000-25482800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:25465400-25499000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:25466400-25516000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:25466800-25515800	Weak transcription	Fetal Stomach	stomach
18	chr6:25468400-25488400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:25469400-25486000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:25469800-25490200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:25471200-25490200	Weak transcription	Small Intestine	intestine
22	chr6:25471600-25486200	Weak transcription	Adipose Nuclei	Adipose
23	chr6:25471600-25597200	Weak transcription	Gastric	stomach
24	chr6:25471800-25493200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:25473400-25482800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:25473400-25490200	Weak transcription	Ovary	ovary
27	chr6:25473400-25495400	Weak transcription	Pancreas	Pancrea
28	chr6:25473600-25482800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:25473600-25483400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:25473600-25499600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:25473600-25516000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:25474000-25484000	Weak transcription	Fetal Intestine Small	intestine
33	chr6:25474000-25484200	Weak transcription	Fetal Thymus	thymus
34	chr6:25474000-25490000	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:25474000-25492200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:25474400-25490000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr6:25475000-25488600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:25475600-25490200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:25476200-25482800	Weak transcription	Thymus	Thymus
40	chr6:25476600-25486200	Weak transcription	Fetal Lung	lung
41	chr6:25476800-25483000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:25476800-25484000	Weak transcription	Aorta	Aorta
43	chr6:25476800-25485800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:25476800-25486200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:25476800-25499800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:25477600-25483200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:25477800-25485000	Weak transcription	NHDF-Ad	bronchial
48	chr6:25477800-25486200	Weak transcription	HSMMtube	muscle
49	chr6:25477800-25490200	Weak transcription	Placenta	Placenta
50	chr6:25477800-25499600	Weak transcription	NHLF	lung

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