Variant report

Variant	rs10498886
Chromosome Location	chr6:73622234-73622235
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10943070	0.81[JPT][hapmap]
rs1935509	0.81[ASN][1000 genomes]
rs4566854	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73616200-73626600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:73616400-73623800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:73620600-73622600	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:73620600-73624000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:73620600-73624400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:73620600-73624600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:73620600-73624600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:73620800-73622400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:73621200-73622400	Enhancers	NHEK	skin
11	chr6:73621200-73624400	Enhancers	HMEC	breast
12	chr6:73621800-73623800	Weak transcription	Psoas Muscle	Psoas
13	chr6:73622000-73622400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:73622000-73623000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:73622000-73623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:73622000-73623600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:73622000-73624600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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