Variant report

Variant	rs10499044
Chromosome Location	chr6:107141295-107141296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:60915630..60918321-chr6:107139758..107142000,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12209982	0.83[ASN][1000 genomes]
rs17067644	1.00[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1852982	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2798360	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4946758	0.81[YRI][hapmap]
rs56060223	0.83[ASN][1000 genomes]
rs9386570	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107136000-107148200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:107137000-107141800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:107137000-107141800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:107137600-107141800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:107139000-107142200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:107139000-107142200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:107139000-107142400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:107139000-107142600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:107139000-107143000	Enhancers	Stomach Mucosa	stomach
10	chr6:107139200-107141600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:107139200-107141800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:107139200-107142600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:107139200-107142800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:107139400-107142200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr6:107139400-107142400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:107139800-107141400	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:107139800-107141400	Enhancers	HSMMtube	muscle
18	chr6:107139800-107142600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:107140000-107142000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:107140000-107142000	Enhancers	Adipose Nuclei	Adipose
21	chr6:107140000-107142400	Enhancers	Fetal Muscle Leg	muscle
22	chr6:107140200-107141800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:107140600-107141400	Enhancers	Hela-S3	cervix
24	chr6:107140600-107142400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr6:107140800-107142000	Weak transcription	NHEK	skin
26	chr6:107140800-107142600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:107141000-107142200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:107141000-107142200	Weak transcription	Brain Anterior Caudate	brain
29	chr6:107141000-107142400	Weak transcription	Small Intestine	intestine
30	chr6:107141000-107146000	Weak transcription	Pancreas	Pancrea
31	chr6:107141200-107148200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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