Variant report

Variant	rs10499470
Chromosome Location	chr7:16506133-16506134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16505228..16507130-chr7:16509923..16512038,2	K562	blood:

Variant related genes	Relation type
ENSG00000272537	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12667182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12669495	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12669598	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12669600	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12670816	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16878761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169492	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17169500	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1981596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2301970	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58888799	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59720170	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6956275	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73679622	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73682024	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7779537	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1034151	chr7:16415497-16578081	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16501000-16511600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:16502800-16506200	Active TSS	Fetal Stomach	stomach
3	chr7:16503000-16506200	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr7:16503600-16506200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:16504200-16506200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:16504800-16506200	Flanking Active TSS	HMEC	breast
7	chr7:16505000-16506200	Active TSS	Fetal Brain Female	brain
8	chr7:16505600-16508600	Weak transcription	Gastric	stomach
9	chr7:16505800-16506200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:16506000-16506200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:16506000-16506200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:16506000-16506200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr7:16506000-16506200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:16506000-16506200	Enhancers	Fetal Brain Male	brain
15	chr7:16506000-16506200	Enhancers	Fetal Intestine Small	intestine
16	chr7:16506000-16506200	Flanking Active TSS	Fetal Kidney	kidney
17	chr7:16506000-16506200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr7:16506000-16506200	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr7:16506000-16506200	Flanking Active TSS	K562	blood
20	chr7:16506000-16506400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:16506000-16506400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:16506000-16506600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr7:16506000-16506600	Enhancers	Fetal Lung	lung
24	chr7:16506000-16511600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:16506000-16511600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:16506000-16511600	Weak transcription	Brain Angular Gyrus	brain

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